<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14368

Description Uncharacterized protein
SequenceMANNPQFSGLQPLRPPMVGSVDPPRSLPPMSFQFRPVVPAPHSQEFISVASQNFQHVGRGVPLMNVRLPPPTHQPQFSQPMQQLPPRSGQPGHGMLPSQAIPLPVSQPNRNFASELPLPQPNSQGPNNAMPNLGGPRTPLSSSYTFAPSSYGQMPRSFNDSTQYQSISQLHAPNVSSEGQVTPLQYTGERPAVTSSIAPETGVRPNSAGGTVAEWREHTSAEGRRFYYNRRTGLSTWEKPFELMTPLERADASTNWKEFTSPDGRKYYYNKVTKESRWIMPEELKLARELVEKAPVKEMQQEMLVNHHAPVTVSPPVAEADTLVNAAQVASSPVSVAPVIATGDGDVQTAAASRSSTSPVVASPVIENPNGVHTPVVVPSSTVSSVEAAVTINDTVAEPMESSNNLSAQDFVSSADGVLVQENEEAMDDVTGKKMNDIASEEKPVDREPISYENKLEAKDAFKALLESTNIGSDWTWDRAMRVIINDKRYGALKTLGERKQAFNEFLVQRKKQEAEERRIKQKKAREEFKKMLEECSELTSSTRWGKVESIFEHDERFKAVERDRDRRDMFENYVEELQKKERAKAMEERKHNIMEYRQFLESCDFIKASSQWRKVQDRLEADERCSRLEKIDRLEIFQEYLRDLEKEEEEQRRIQKEELRKTERKNRDDFRKLMEEHLAAGTLTAKSHWRDYCMKVKDLPTYLAVASNTSGSTPKDLFEDVVEELQKQYHEDKTRIKDAVKLGKVMLTSTWKLEDFKTVISNDIGSPPISDANLKSLPVKLPGYMLDDELCSTLWDEVVITYKHSRSCNE
Length811
PositionUnknown
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.07
Grand average of hydropathy-0.751
Instability index54.56
Isoelectric point5.81
Molecular weight91757.12
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14368
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     352.13|      66|      67|     517|     582|       1
---------------------------------------------------------------------------
  457-  514 (77.86/54.58)	..............EAKDAFKALL.E...STNIGSDWTWD....RAMRVIINDKRYGALKTLGE...RKQAFNEFLVQRKKQE
  517-  582 (109.04/79.73)	ERRIK.......QKKAREEFKKMLEE...CSELTSSTRWG....KVESIFEHDERFKAVERDRD...RRDMFENYVEELQKKE
  585-  649 (99.16/71.75)	KAMEE.......RKHNIMEYRQFLES...CDFIKASSQWR....KVQDRLEADERCSRLEK.ID...RLEIFQEYLRDLEKEE
  652-  729 (66.06/45.06)	QRRIQkeelrktERKNRDDFRKLMEEhlaAGTLTAKSHWRdycmKVKDL....PTYLAVASNTSgstPKDLFEDVVEELQKQ.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     186.42|      59|      67|       4|      70|       2
---------------------------------------------------------------------------
    4-   28 (33.08/ 8.66)	............................................................NPQFSGLQPLR..PPMV...GSVDPPRS.LP
   29-   97 (83.15/48.68)	PMS.....FQFRPVVPAPHSQEfISVASQNFQhvGRGVPLMN..........vrlpppthQPQFS..QPMQqlPPRS...G..QPGHGmLP
  104-  183 (70.19/28.58)	PVSqpnrnFASELPLPQPNSQG.PNNAMPNLG..GPRTPLSSsytfapssygqmprsfndSTQYQSISQLH..APNVsseGQVTP......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     150.21|      39|      40|     205|     243|       3
---------------------------------------------------------------------------
  205-  243 (75.16/48.54)	PNSAGGTVAEWREHTSAEGRRFYYNRRTGLSTWEKPFEL
  246-  284 (75.05/48.46)	PLERADASTNWKEFTSPDGRKYYYNKVTKESRWIMPEEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     111.98|      20|      20|     313|     332|       4
---------------------------------------------------------------------------
  313-  332 (32.72/23.46)	VSPPVAEADTLVNAAQVASS
  336-  353 (26.25/17.11)	VAPVIATGDGDVQTA..AAS
  362-  381 (29.10/19.91)	ASPVIENPNGVHTPVVVPSS
  386-  403 (23.90/14.80)	VEAAVTINDTV..AEPMESS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14368 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) APVIATGDGDVQTAAASRSSTSPVVASPVIENPNGVHTPVVVPS
2) ENEEAMDDVTGKKMNDIASEEKPVDREPISY
3) GRGVPLMNVRLPPPTHQPQFSQPMQQLPPRSGQPGHGMLPSQAIPLPVSQPNRNFASELPLPQPNSQGPNNAMPNLGGPRTPLSSSYTFAPSSYGQMPRSFNDSTQYQSISQLHAPNVSSEGQVTPLQYTGERPAVTSSIAPETGVRPNSAGGTVAEWR
4) MANNPQFSGLQPLRPPMVGSVDPPRSLPPMSFQFRPVV
337
422
58
1
380
452
216
38










Molecular Recognition Features






MoRF SequenceStartStop




1) GRKYYYN
264
270