<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14360

Description Uncharacterized protein
SequenceMEGSEKIETERVFGLPPPLSLTVGIAINGKTKSKYVVKWALEKFIQEEKVLFKLLHVRPKITTVPTAMGNLIPISQVREDVAAAYKKEMEWQTNQLLLPYKNICTQTKVQVDVIMIESDDVANAIAEEVAKCTIKKLVIGASSCGMFTRKLKGNDLSSRISTCTPKFCTVYAISKGKLKSIRPSDLETNGSTRDDSSVTSSTNSSSSQTLSSQTDAASVSSYSQFHSPSLPMQRFQALSCINHGLFHSTTNSIETNHSRHQSLDVDVQAISTINQGLLHSRTNSVETINSRCQSLDIEEGNYVASSWPSTSEIGHPISQSSSCKSLPTDYQSWVSDQASTSDMLTECSSSDSQQANINFELEKLRIELRHVRGIYAMAQNEAIDASRKLNDLSNRRFEEATKLKEIHCREEKVKELARQEKERSKSATKEAEYTRTCAEREASQRQEAELKAMRDAKEKERLQNALVGPVQQYQKFTWEEIVSATSSFCNDFKIGMGAYGTVYKCSLHHTTAAVKVLHSKDNKNSKQFQQELEILSKIHHPHLLILLGACYDHGCLVYEYMENGSLEDRLLRVNNTPPIPWFERYRIAWEVASALVFLHSSKPKPIIHRDMKPANILLDRNFVSKIGDVGLSTMLNTDASSATSMYKDTALVGTLCYIDPEYQRSGLVSPKSDVYAFGMVILQLLTAKPAKALTHIMETAIDDDRLLEVLDSEAGNWPLEETKELALLGLSCAELRRGDRPDLKDEVLPALERLKEIADKARDTISCIHPTPPNHFICPILKDVMMDPCVAADGYTYDRKAIEKWLEENDKSPMTNLPLPNKNLLPNYTLLSAIVEWKSNKQ
Length842
PositionTail
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.06
Grand average of hydropathy-0.420
Instability index41.10
Isoelectric point6.38
Molecular weight94331.25
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14360
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     137.54|      29|      29|     236|     264|       1
---------------------------------------------------------------------------
  215-  231 (29.12/13.49)	DAASVSSYSQFH..........S..PSLP
  236-  264 (56.04/32.04)	QALSCINHGLFHSTTNSIETNHSRHQSLD
  268-  296 (52.38/29.52)	QAISTINQGLLHSRTNSVETINSRCQSLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.12|      27|      28|     129|     156|       2
---------------------------------------------------------------------------
  129-  156 (42.19/37.48)	VAKCTIKKLVIGASSCGMFtRKLKGNDL
  160-  186 (47.93/37.15)	ISTCTPKFCTVYAISKGKL.KSIRPSDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.00|      11|      14|     422|     432|       5
---------------------------------------------------------------------------
  422-  432 (18.09/12.56)	ERSKSATKEAE
  439-  449 (18.91/13.47)	EREASQRQEAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     151.98|      54|     130|     561|     628|       6
---------------------------------------------------------------------------
  561-  628 (74.25/85.55)	MENGSLEDRLLRVNNTPPIPW.FERYRiawEVasALVFLHSSK....PKPiihrDMK....PAnilLDRnfVSKIGD
  697-  759 (77.73/49.50)	METAIDDDRLLEVLDSEAGNWpLEETK...EL..ALLGLSCAElrrgDRP....DLKdevlPA...LER..LKEIAD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14360 with Med32 domain of Kingdom Viridiplantae
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