<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14359

Description Uncharacterized protein
SequenceMEGSEKIETERVFGLPPPLSLTVGIAINGKTKSKYVVKWALEKFIQEEKVLFKLLHVRPKITTVPTAMGNLIPISQVREDVAAAYKKEMEWQTNQLLLPYKNICTQTKVQVDVIMIESDDVANAIAEEVAKCTIKKLVIGASSCGMFTRKLKGNDLSSRISTCTPKFCTVYAISKGKLKSIRPSDLETNGSTRDDSSVTSSTNSSSSQTLSSQTDAASVSSYSQFHSPSLPMQRFQALSCINHGLFHSTTNSIETNHSRHQSLDVDVQAISTINQGLLHSRTNSVETINSRCQSLDIEEGNYVASSWPSTSEIGHPISQSSSCKSLPTDYQSWVSDQASTSDMLTECSSSDSQANINFELEKLRIELRHVRGIYAMAQNEAIDASRKLNDLSNRRFEEATKLKEIHCREEKVKELARQEKERSKSATKEAEYTRTCAEREASQRQEAELKAMRDAKEKERLQNALVGPVQQYQKFTWEEIVSATSSFCNDFKIGMGAYGTVYKCSLHHTTAAVKVLHSKDNKNSKQFQQELEILSKIHHPHLLILLGACYDHGCLVYEYMENGSLEDRLLRVNNTPPIPWFERYRIAWEVASALVFLHSSKPKPIIHRDMKPANILLDRNFVSKIGDVGLSTMLNTDASSATSMYKDTALVGTLCYIDPEYQRSGLVSPKSDVYAFGMVILQLLTAKPAKALTHIMETAIDDDRLLEVLDSEAGNWPLEETKELALLGLSCAELRRGDRPDLKDEVLPALERLKEIADKARDTISCIHPTPPNHFICPILKDVMMDPCVAADGYTYDRKAIEKWLEENDKSPMTNLPLPNKNLLPNYTLLSAIVEWKSNKQ
Length841
PositionTail
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.06
Grand average of hydropathy-0.417
Instability index40.90
Isoelectric point6.38
Molecular weight94203.12
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14359
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     189.27|      29|      29|     236|     264|       1
---------------------------------------------------------------------------
  173-  197 (23.37/ 9.03)	.....ISKGKLKSIR.PSdLETNGSTRDDSS
  208-  231 (34.14/16.36)	QTLSSQTDA...ASV.SS.YSQFHS..PSLP
  236-  264 (54.59/30.26)	QALSCINHGLFHSTT.NS.IETNHSRHQSLD
  268-  296 (49.59/26.86)	QAISTINQGLLHSRT.NS.VETINSRCQSLD
  308-  332 (27.58/11.90)	PSTSEIGHPISQSSScKS.LPTD...YQS..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.53|      23|      26|     397|     422|       2
---------------------------------------------------------------------------
  397-  421 (34.40/31.48)	EEATKLKEI..HCREEKVKElaRQEKE
  424-  448 (34.13/18.67)	KSATKEAEYtrTCAEREASQ..RQEAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     234.52|      65|     130|     560|     627|       3
---------------------------------------------------------------------------
  560-  627 (105.42/82.21)	MENGSLEDRLLRVNNTPPIPW.FERYRIAWEVASALVFLHSSK....PKPIIHRDM..K....PANIlLDRnfVSKIGD
  646-  694 (57.17/34.38)	.KDTALVGTLCYID.....PE.YQRSGLVSPKSDVYAF..........GMVILQLLtaK....PAKA.LTH........
  696-  758 (71.93/46.00)	METAIDDDRLLEVLDSEAGNWpLEETK...EL..ALLGLSCAElrrgDRP....DL..KdevlPA...LER..LKEIAD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.20|      39|     234|     118|     159|       4
---------------------------------------------------------------------------
  118-  159 (59.69/58.01)	SDDVANaIAEEVAKCTIK.KLVIG....ASSCGM.FTRKLkgNDLSSR
  350-  394 (53.51/39.61)	SDSQAN.INFELEKLRIElRHVRGiyamAQNEAIdASRKL..NDLSNR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14359 with Med32 domain of Kingdom Viridiplantae
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