<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14356

Description Uncharacterized protein
SequenceMRKNLSNSGQDNKCNEKLPEVNWSQHANAHDNFSSQKKFLSSNFLFSLEGQKPCIEGSMAMRLTCCQIQSLQRLQSQEVEKAWHTLCTLQISCRNYLQPGKTGPLKNARNDSLQDVGKPTLHSSSNRRKDSEDMHANQNFRDSSLRNNESTRYTGNVFPQDNARAAEAGSDMGRQNNIKGSAINNTQSKAFVGLMSNHIVHTKQSKESPEALADFIDDDDLLGNIDVDQIVMEHYQSTSTPQPSVSKFPPITPTADKNNFMRSEETFLPSELCQNCNHGFKLGLCPEAANHLQEMKDMLISVSNELLDNTANLSPAQIEKLRQDRLQLNKQIQQLEKYLCDGERQNSHFSASTATRNFQYETPQSAACRIDPPRFNAQFQLPNGPGGHENWNLPSVSFSSVDRFGLSSGPVDREPYIPKFIEVNYIEGSNDPKWSSTNFSWTKKLEAYNKKVFGNHSFRPNQREVINASMSGFDVFVLMPTGGGKSLTYQLPALISPGITLVISPLVSLIQDQIMHLLQANISATYLSANMDWTEQQEILRELCSDYCKYKLLYVTPEKVAKSDVLLRHLDSLNARGLLARIVIDEAHCVSQWGHDFRPDYKELGILKKKFGKTPVLALTATATASVKEDVVQALGLVDCIVFRQSFNRPNLWYSVIPKTKKCLDDIDQFIKGNHFDECGIIYCLSRMDCEKVAKKLQECGHKAAFYHGNMDSAQRAYIQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIIQGQIEQNPWTPGYNRTNMTNSERVLEKNTENVLRMVSYCENDVDCRRLLQLLHFGEKFDSGNCKKTCDNCSKIKTLVEKDVTEIAKQLVELVKLTGQQFSSSHILEVYRGSLNQYVKRYKHETLSLHGAGKHLAKGEASRILRHLVTEDFLVEDVKKSDIYGSVSSVLKVNESKAYNLCSSGQTIVLRFPSAVKVSKLSKYDATPAKGTLTYGEQSPLVDAPAQPQSEVDLSLSAKLYSALRMLRTILVKEAGDGVMAYHIFGNATLQHLCKRIPRTKEELLEINGIGKAKVSKYGDRLLETIESTIREHHNTDKNSSGSNDSTDSIKRRRDATRAAKLNVEEEDDFTKSTGRSKKRAAKLQNKDTEVYNARETDQNQCLDDDLDFEDSCYDHETNGSAVEADKNGTGRVLPSWSTPGNKIKSSNHNLFQEYAMNS
Length1230
PositionUnknown
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.07
Grand average of hydropathy-0.602
Instability index46.42
Isoelectric point7.92
Molecular weight138484.56
Publications









Function






Annotated function


GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central
plasmodesma	GO:0009506	IEA:EnsemblPlants

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
cellular response to abscisic acid stimulus	GO:0071215	IEA:EnsemblPlants
cellular response to cold	GO:0070417	IEA:EnsemblPlants
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14356
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.01|      21|      22|     371|     391|       1
---------------------------------------------------------------------------
  359-  377 (26.89/12.68)	QYETPQSAACR................iDPPRFNA
  378-  400 (34.11/18.03)	QFQLPNGPGGHENW............nlPSVSFSS
  403-  437 (28.00/13.50)	RFGLSSGPVDREPYipkfievnyiegsnDPKWSST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.46|      17|     132|     546|     562|       2
---------------------------------------------------------------------------
  546-  562 (32.48/21.38)	DYCK..YKLLYVTPEKVAK
  677-  695 (29.97/19.14)	DECGiiYCLSRMDCEKVAK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.41|      18|      23|    1115|    1134|       3
---------------------------------------------------------------------------
 1115- 1134 (24.51/19.24)	NDSTDSIKRRRdaTRAAKLN
 1139- 1156 (28.90/16.55)	DDFTKSTGRSK..KRAAKLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.87|      16|      23|     833|     853|       4
---------------------------------------------------------------------------
  833-  851 (23.73/25.24)	CENDVD.CRRLLQLLhfgEK
  857-  873 (25.14/ 9.22)	CKKTCDnCSKIKTLV...EK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     117.64|      35|     138|     446|     481|       5
---------------------------------------------------------------------------
  446-  481 (58.56/43.44)	EAYNKKVFGnHSFRPNQRE..VINASMSGFDVFVLMPT
  586-  622 (59.09/38.90)	EAHCVSQWG.HDFRPDYKElgILKKKFGKTPVLALTAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.74|      20|      23|     960|     979|       6
---------------------------------------------------------------------------
  960-  979 (32.56/22.34)	SVLKVNESKAYNLCSSGQTI
  985- 1004 (31.19/21.06)	SAVKVSKLSKYDATPAKGTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     160.17|      50|     155|     885|     936|       7
---------------------------------------------------------------------------
  885-  936 (79.94/55.21)	LVKLTGQQFSSSHILEvyRGSLNQYVK...RYKHETLSLHGAGKHLAKGEASRIL
 1042- 1094 (80.23/49.18)	LVKEAGDGVMAYHIFG..NATLQHLCKripRTKEELLEINGIGKAKVSKYGDRLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.88|      11|      16|     121|     131|       8
---------------------------------------------------------------------------
  121-  131 (19.67/11.33)	LHSSSNRRKDS
  140-  150 (19.21/10.88)	FRDSSLRNNES
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14356 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) CYDHETNGSAVEADKNGTGRVLPSWSTPGNKIKSSNHNLFQEYAMNS
2) GKTGPLKNARNDSLQDVGKPTLHSSSNRRKDSEDMHANQNFRDSSLRNNESTRYTGNVFPQDNARAAEAGSDMGRQNNIKGSAINNTQ
3) MEHYQSTSTPQPSVSKFPPITPTADKNNFMRS
4) TIESTIREHHNTDKNSSGSNDSTDSIKRRRDATRAAKLNVEEEDDFTKSTGRSKKRAAKLQNKDTEVYNARETDQNQ
1184
100
232
1096
1230
187
263
1172










Molecular Recognition Features






MoRF SequenceStartStop




1) FQEYAMN
1223
1229