<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14353

Description Uncharacterized protein
SequenceMDPESKKFERGPRELTGAVDLISHYKLLPHHEFFCKRSLPLSISDTHYLHTVVGDTEIRKGEGMQLDQLIQNTSYSRDSNSRIQPFDLDVLREAFQFKETTPVDLPPAEKGTPTIAAKSKSESKDKERKHKKHKDKDKEKDKEHKKHKHRHKDKDRSKDKDKEKKKDRSGHHDSGGDHSKKHHEKKRKHDGDEYINDVHKHKKSKHKSSKIDEIGVIKVAG
Length221
PositionHead
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.05
Grand average of hydropathy-1.543
Instability index38.19
Isoelectric point9.51
Molecular weight25691.57
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
transcription factor binding	GO:0008134	IBA:GO_Central

GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14353
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.87|      15|      15|     124|     138|       1
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  124-  138 (29.28/ 7.74)	KDKERKHKKHKDKDK
  140-  154 (29.59/ 7.89)	KDKEHKKHKHRHKDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      92.64|      19|      20|     155|     173|       2
---------------------------------------------------------------------------
  155-  173 (34.91/12.75)	DRSKDKDKEKK.KDRSGHHD
  177-  192 (30.22/10.10)	DHSK.KHHEKK.RKHDG..D
  193-  212 (27.51/ 8.58)	EYINDVHKHKKsKHKSSKID
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14353 with Med19 domain of Kingdom Viridiplantae
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