<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14349

Description Uncharacterized protein
SequenceMISASGEEDFEQRPDSVQSTDLALLAARNEIEDDQGQITEKDTDLNPLEAHEKLTNAKGELDVILDLVKNLESTVYLDFRILSSKPRSANALQDLADESKVKYGRKHDMLIDISARLQKGAIALRAAAANDNLYYNQVARLQRFWKIRLNPMTSEFSDSPFSVDLSLTTVSRTGPIHSNDDNQAGNPSRHAKLILVPLVKDVSGSVKIRNRGASPELSGALGSKSVHQHLISLQQKQLWAIAASDLEHEARKGFSASNFTYSLAEKVLEAVASKTASLHMCSLRPFILEHITVCRLTQGNVLEPSRPYSSTVGCHELLPELAAWISHIFFRDNLYASLDAQVDSRPFVRLRWVPANHPYTSAMNLQLSRHSKILLLIQETSVELEGIPDPSGTTSRWAREGCLTATKHEMGHLVRSIVQQATNKLL
Length426
PositionHead
OrganismChlamydomonas eustigma
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Chlorophyta> core chlorophytes> Chlorophyceae> CS clade> Chlamydomonadales> Chlamydomonadaceae> Chlamydomonas.
Aromaticity0.06
Grand average of hydropathy-0.311
Instability index40.74
Isoelectric point6.44
Molecular weight47287.02
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14349
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     166.43|      52|     223|      84|     172|       1
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  107-  166 (76.53/102.78)	HDMLIDISARLQKgaIALRaaaanDNLYYNQVARLQ..RFWKIRLNPMTSEFSdSPFSVDLS
  315-  368 (89.90/42.52)	HELLPELAAWISH..IFFR.....DNLYASLDAQVDsrPFVRLRWVPANHPYT.SAMNLQLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.41|      21|      21|      18|      38|       2
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   18-   38 (33.42/21.73)	QSTDLALLAARNEIEDDQGQI
   41-   61 (31.99/20.52)	KDTDLNPLEAHEKLTNAKGEL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14349 with Med17 domain of Kingdom Viridiplantae
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