<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14342

Description Uncharacterized protein
SequenceMLHSRTVASCSIETSFSSESDRSNVQFFPSSWCPLTNLIAAPLQTHVAGIQRIQVILWEPSDSGEHFILEGPASEETSAIVSVSWSPHGCRRALLVARKDAISTVWFQSPLDDSMEYLAPLPAINCWFGSKLQEEPPVVPSAPDQPQTNSTLKTASSISQQQQVPVAPPDMDELQDFFTEEDPNSFTGHIGSFLLDGKQDTEGDSMNPAASASAASFIMQRHHWVRPGMLTAVFVDESSHVTFWRMSVDRTWLKSKPQLLLPELKSRIVLAHAVSALGDTVRVAVVTEDDPSTAHIIEICGSPFSDEASSVNKVARISLPTPQSDGLEGPRKIGQISFLSSGSSLLLLDRPLLPLGISGMPADFNLYRYNQMQIPGTMSAFFDEQPGACFAASSLPFESTASSASSATFCVAEDDSKVILVCNRTLQSLDSLTLQLYSSTDIECNVLDASALNQRRQSCTVAQGLCISSNSCCAAMFEIVQPLDKTLSSNLNSSLCVCVSVLPEAGPASQTMSAALPDDRQLRMNVLRLAWAALRGTSYWDSIQRCIADAIQQDGRVDSGALAKVMDMLDVMWHSFDKQSLPVYLLHLDRIKLALLSQTSGPEAVVLANDFMVRLAAKNMQATLQAISTATLEDPNNQQAMLKTWAENTIPFKDWIHWVLQYFVLLLCSLKRWHATGYDILPGLRLLTDGLTMKRLFFLYKALITHSSNSPARIAADGLFKAWNSAKAVPPSEFELHTFSRQLFQGPFYLHLSSPGPFYSADALRSLVSPEILATIPELSAEEILDRMRALGASSASLDRDWYRDYSMQAESAMKTWMDWRGRCSAETTLILPPVTPEIAESGLNEARALVEGSASARKKRWMKQRALALHPLGMVASSRSKVAAAAALHGHAMYDCLSGKRIDWETGAVTFESVDGIFTTAEFQDTSTESTARSSTPRAWIGSIPPSQSMWKRIKLS
Length958
PositionTail
OrganismChlamydomonas eustigma
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Chlorophyta> core chlorophytes> Chlorophyceae> CS clade> Chlamydomonadales> Chlamydomonadaceae> Chlamydomonas.
Aromaticity0.08
Grand average of hydropathy-0.074
Instability index55.03
Isoelectric point5.43
Molecular weight105026.34
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14342
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.80|      23|      85|     389|     411|       1
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  389-  411 (41.27/20.70)	CFAAS...SLPFESTASSASSATFCV
  472-  497 (35.52/16.85)	CCAAMfeiVQPLDKTLSSNLNSSLCV
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     206.07|      64|     433|     316|     383|       2
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  316-  383 (105.52/72.21)	RISLPTP..QSDGLEG...PRKIGQISFLSSGSsllLLDRpLLPLGISGMPADFNLYRYNQMQIPGTMSAFFD
  751-  819 (100.55/57.94)	HLSSPGPfySADALRSlvsPEILATIPELSAEE...ILDR.MRALGASSASLDRDWYRDYSMQAESAMKTWMD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.84|      20|      20|     101|     120|       3
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   81-   98 (20.82/ 8.86)	.VSVSW..SPHGCRRALL.vAR
  101-  120 (37.34/21.80)	AISTVWFQSPLDDSMEYL..AP
  123-  143 (30.68/16.58)	AIN.CWFGSKLQEEPPVVpsAP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14342 with Med16 domain of Kingdom Viridiplantae
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