<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14332
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MVDSVHKDLGLVTRACWAKGVSPSSWQQLVAQTTASSLLPVEVEQQICGKLYLFGIFWNPDALLQLLADSGSTPSPLVVDYVESAVTPSTSVAQLAPSLVRVGFFAARLTRFSATSIALDRAFDVVNKVLSSTAPDVATHVMLNADELVASLDWALGMISRLGTAHSTPGELTLQSPTVTYISAFLQRPPIPFSSVGANPQLLDATLAKLDAVVSTLQRLPVDPTAAQISTGMQRRLLQIKFALSPNAEVTSKVLVVPRAHIASPRPMSSLDLAPITQADPDVAFLISDLVSKAVLNNTCMFSSFSSLDLETQSYRGHTSAGVANTPVATARIVALLKDRLAQADARGSTNEQALSRAFLEIFLAVTVDLRESVGKFTRQASFAYSRLLELLRDVAATRKVDVQGSSDLVRSALESSVRLFADSTRTENEHAMDLDGASTRPVLDALVAGLCQHELISTDLAASLSPSLHQSQLVPSSFPSTTAQLTSGSVDSVREVFASLESHGPASHRAISDSLVEAVSCLASNVDILGFSSICSVLVEQPSILWIVFLHVQPFLVLSPIRSLLDTFGSSLENLGYDDPSTGYGVVLLFIQVVISRHGLQTDLVHHLGSRRGFLVWWLPSISATYPLTSLDDDAKATINGWINALFGDGISDELMHQTNPRTLLKVLPTVAKQSLAACHAGVIDSEQLRDGLSFLLQSLLSFTLPGVLKWLVGEIERTPTGDYQTMMLDMLSVLIFSESLPKTIVELVASDLATLVHRLPSTKSTTIDVKRVQNLIQPYRRALTSNKNEATPHPSSDIAVPMDFSFDCTIYSSSLTSLLYTLLNSSPPTSTLTDGLRMTRLAKTILLVPSHSSDLADAHAGRFTSFVLQDLPSVSINHSNATKLGSWIGEALKAYQFVENELVNEGQSSGGVFDLLVSSVIKDVKRRRALKLGDGEAVEVWAQELVLRCRAVGEGLEKM |
Length | 961 |
Position | Tail |
Organism | Microbotryum intermedium |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Basidiomycota> Pucciniomycotina>
Microbotryomycetes> Microbotryales> Microbotryaceae> Microbotryum.
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Aromaticity | 0.06 |
Grand average of hydropathy | 0.184 |
Instability index | 42.56 |
Isoelectric point | 5.53 |
Molecular weight | 103546.14 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
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GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
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GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
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Interaction
Repeat regions
Repeats |
>MDP14332
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 547.06| 151| 326| 456| 618| 1
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456- 618 (220.20/158.47) LISTDLAASLspsLHqsQLvPS...........................................SFPSTtaqLTSGSVDSVREVFASLESHGPAShrAISDSLVEAVS..CLASNVDILG...............FSSI..CSVLVEQPSILW..IVFLHVQPFLVLSPIRSLLDTFGSSLENLGYDDPSTGYGVVLL.FIQVVISRHGLQTDLVhHLGSRRGFLVW
629- 747 (142.69/79.28) LTSLDDDAK......................................................................ATINGWINALFGDG......ISDELMHQTNprTLLKVLPTVA...............KQSLaaCHAGVIDSEQLRdgLSFL.LQSLLSFT.LPGVLKWLVGEIER....TPTGDYQTMMLdMLSVLIFSESLPKTIV............
749- 943 (184.17/104.93) LVASDL.ATL...VH..RL.PStksttidvkrvqnliqpyrraltsnkneatphpssdiavpmdfSFDCT...IYSSSLTSL..LYTLLNSSPPTS..TLTDGL..RMT..RLAK..TILLvpshssdladahagrFTSF....VLQDLPS.....VSINHSNATKLGSWIGEALKAYQFVENELVNEGQSSG.GVFDL.LVSSVIKDVKRRRAL..KLGDGEAVEVW
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 127.90| 33| 46| 161| 193| 2
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161- 193 (59.53/36.09) RLGTAHSTPGELTLQSPTVTYISAFLQRP..PIPF
209- 242 (45.43/25.77) KLDAVVSTLQRLPVD.PTAAQISTGMQRRllQIKF
243- 268 (22.94/ 9.31) ....ALSPNAEVT..SKVLVVPRAHIASP.rPM..
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 68.53| 26| 30| 354| 381| 3
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354- 381 (35.49/32.93) ALSRaFLEIF..LAVT..VDLRESvGKFTRQA
384- 413 (33.04/20.64) AYSR.LLELLrdVAATrkVDVQGS.SDLVRSA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 156.24| 44| 46| 55| 100| 4
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20- 52 (30.73/11.96) ................GVSPSswqQL.VAQTTASSLLP..VEVEQQICGKLY
55- 100 (66.78/42.46) GIFwnPDALLQLLADSGSTPS...PL.VVDYVESAVTP..STSVAQLAPSLV
103- 149 (58.74/30.52) GFF..AARLTRFSATSIALDR...AFdVVNKVLSSTAPdvATHVMLNADELV
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