<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14315

Description Uncharacterized protein (Fragment)
SequenceMEEYRQGPPAYKRQRLGDPLQASANFLDARINLGANMVPFGYIASQDREVDMNMAAMPMGGNLALNPVQDFGQLAVPDWRHAIALDSRNRAVHKIYQSLMHVTRNGENSDNRSPKWIAAARKIEGKAFKTATSRSQYFTLIKEEIHKIEMGYGFPGMSSQFLPSSSTTSAAAANNIQLVNMQQNYGSNGFGEPVTATQSHSQPGIAHSTTSVNLFSDEPIGGAMRIPVTSSIGSARPQFEAYGRPPGPRPLLHTDQVPGSSIPIGDPTQFMPNAEQVLAPNLLHSMNALMAHSQFMPSSAVGSQQRFGLNDNGQGVLSENSSIINSQMPGRSKEWHKSVTFNDRNRLVRKMAQYLSTTPVPQANTMDNRMNSCLAIAQSVESETYKAANSLAQYYDLMAKRCYFLAKDRANPTQQPGIQYYNLSDIRRTYEALGIAYPMNPSPFPSNPPNGGPAGN
Length456
PositionTail
OrganismTrichomalopsis sarcophagae
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Hymenoptera> Apocrita> Parasitoida> Chalcidoidea> Pteromalidae> Pteromalinae> Trichomalopsis.
Aromaticity0.08
Grand average of hydropathy-0.529
Instability index53.67
Isoelectric point9.15
Molecular weight49965.63
Publications
PubMed=28648823

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-KW

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14315
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.53|      14|      17|      28|      41|       1
---------------------------------------------------------------------------
   28-   41 (24.65/16.21)	DARINLGANMVPFG
   47-   60 (25.88/17.41)	DREVDMNMAAMPMG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.57|      23|      23|     250|     272|       2
---------------------------------------------------------------------------
  214-  241 (19.41/ 6.46)	.LFSDEPIGGAmRIPvtssIGSaRPQFEA
  250-  272 (45.27/23.68)	PLLHTDQVPGS.SIP....IGD.PTQFMP
  281-  297 (30.89/14.11)	NLLH......S.MNA....LMA.HSQFMP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.23|      10|      19|      86|      95|       3
---------------------------------------------------------------------------
   86-   95 (17.47/10.49)	DSRNRAVHKI
  108-  117 (19.77/12.77)	NSDNRSPKWI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.15|      24|     255|     118|     141|       4
---------------------------------------------------------------------------
  118-  141 (39.53/27.28)	AAARKIE.GKAFKTATSRSQYFTLI
  143-  160 (18.01/ 8.37)	EEIHKIEmGYGFPGMSSQ.......
  377-  398 (30.60/19.43)	..AQSVE.SETYKAANSLAQYYDLM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14315 with Med15 domain of Kingdom Metazoa
Unable to open file!