<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14310

Description Protein TolA
SequenceMKTGLASSVLLHLGVLGFAVISLSSPKPFEIDEAIAVTAISETELNQLVKGERRADKEEPPAPEKVEADELRTDAVNVGSNVADLDNAPSALPSERKVESSAAAAPPLPMARPEPKEKPVEVAKAEPEPEPEKEEKAEPKTEPEIDPVAELLKKAEQERQQQEEQRQAEEAKKKAEEEKRKAVEEEERKKRELAEAEAKRKAEAEAKKLAEAKALEDDIKALINKQDEKGGGARASTKTAGAGASRTNAPKLSASEMAALRDQLGGCWSIDAGIVEADSLLVSVTFSLDQNGKLEGQPRVTKSSGNPQFDRSAVRAIQKCNIQGLRVPEGKYETWREVIVNFDPRDMFF
Length349
PositionTail
OrganismNotoacmeibacter marinus
KingdomBacteria
LineageBacteria> Proteobacteria> Alphaproteobacteria> Rhizobiales> Notoacmeibacteraceae> Notoacmeibacter.
Aromaticity0.03
Grand average of hydropathy-0.755
Instability index52.79
Isoelectric point5.00
Molecular weight38016.25
Publications
PubMed=28771124

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW

GO - Biological Function
toxin transmembrane transporter activity	GO:0019534	IEA:InterPro

GO - Biological Process
bacteriocin transport	GO:0043213	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14310
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.44|      19|      19|     169|     187|       1
---------------------------------------------------------------------------
  134-  161 (19.46/ 6.05)	EEKAEPktepeidpvAELLKKAEQERQQ
  182-  208 (21.98/ 7.81)	AVEEEE.rkkrelaeAEAKRKAEAEAKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.99|      16|      19|      89|     107|       2
---------------------------------------------------------------------------
   52-   68 (20.71/ 7.15)	ERRADKE...EPPaPEKVEA
   95-  114 (20.28/13.21)	ERKVESSaaaAPPlPMARPE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14310 with Med2 domain of Kingdom Bacteria
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