<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14279

Description Uncharacterized protein
SequenceMTAAPAPSPQQIRDRLLQAIDPQSNIHNMVAVLEVISSLEKYPITKEALEETRLGRLINEVRKKTSNEELAKRAKKLLRNWQKLIEPVTPSEAVPRALPNPPGSANGGAHNCKAEAAVPAAAGPKPISELKSRNDIQKLNSPKAEKLGNRKRKGEHRDGHQGPPAPKVSKVSHEILQNSSPPPTNGIGGSPENFPSPVDVNLHAGPESSRTELSENDKHSKIPVNAVKPHTSSPGLVKPSSTSSLLKTAVLQQHEKSEESTGSHQPKSPRCSSFSPRNVRHDTFARQHSTYSPKDSMPSPSQRSQFLDTAQVPSPPPSLMQPSTPPMPAKRLELSQQPAPEASQHWQEQQVAADSQHRHAAGALPQHTAPSCKASSHPGESLASHVGFSQDASKMDSDDAASGSDSKKKKRYRPRDYTVNLDGHVTEGGVKPVRLKERKLTFDPMTGQIKPLTPKDPLQVEIPALTEQHRTETEKQEQKPNLQSPFEQTNWKELSRNEIIQSYLNRQSSLLSSSGVQTPGAHYFMSEYLKQEESTRKEARKTHVLAPNSKPTDLPGVTREVTGDDLNRIREHNWPGVNGCYDTQGNWYDWTQCISLDPHGDDGRLNILPYVCLD
Length614
PositionUnknown
OrganismColinus virginianus (Northern bobwhite) (Tetrao virginianus)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Neognathae> Galloanserae> Galliformes> Odontophoridae> Colinus.
Aromaticity0.04
Grand average of hydropathy-0.938
Instability index63.45
Isoelectric point9.00
Molecular weight67602.73
Publications
PubMed=24621616

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats
>MDP14279
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.96|      22|      22|     292|     313|       1
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  280-  301 (35.60/12.86)	RHDTFARQHSTYSPKDSM..PS.PS
  302-  326 (31.36/10.59)	QRSQFLDTAQVPSPPPSLmqPStPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.29|      18|      22|     428|     448|       2
---------------------------------------------------------------------------
  431-  448 (31.45/21.14)	KPVRLKER.KLTFDPMTGQ
  450-  468 (26.83/ 9.28)	KPLTPKDPlQVEIPALTEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     286.33|      80|     172|     332|     428|       4
---------------------------------------------------------------------------
  114-  157 (48.53/13.55)	.......................AEAAVPAAAGP......KPI.SELKSR....ND..IQKL................................NSPKAEKLGNRKRKGE...HR...
  163-  278 (98.46/33.96)	PPAPKVSKVSHEILQNSSPPPTNGIGGSPENFPSPVDVNLHAGpES..SRTELSENdkHSKIpvnavkphtsspglvkpsstssllktavlqqhEKSEESTGSHQPKSPRcssFSPRN
  337-  416 (139.34/76.19)	QPAPEASQHWQEQQVAADSQHRHAAGALPQHTAPSCKASSHPG.ESLASHVGFSQD..ASKM................................DSDDAASGSDSKKKKR...YRPRD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14279 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) TRKEARKTHVLAPNSKPTDLPGVTREVTGDDLNRI
2) VTPSEAVPRALPNPPGSANGGAHNCKAEAAVPAAAGPKPISELKSRNDIQKLNSPKAEKLGNRKRKGEHRDGHQGPPAPKVSKVSHEILQNSSPPPTNGIGGSPENFPSPVDVNLHAGPESSRTELSENDKHSKIPVNAVKPHTSSPGLVKPSSTSSLLKTAVLQQHEKSEESTGSHQPKSPRCSSFSPRNVRHDTFARQHSTYSPKDSMPSPSQRSQFLDTAQVPSPPPSLMQPSTPPMPAKRLELSQQPAPEASQHWQEQQVAADSQHRHAAGALPQHTAPSCKASSHPGESLASHVGFSQDASKMDSDDAASGSDSKKKKRYRPRDYTVNLDGHVTEGGVKPVRLKERKLTFDPMTGQIKPLTPKDPLQVEIPALTEQHRTETEKQEQKPNLQSPFEQTNW
535
88
569
491










Molecular Recognition Features






MoRF SequenceStartStop




1) IRDRLL
2) YRPRDY
12
412
17
417