<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14271

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMDLAYVCEWEKRPKSDHCPSIPLVCAWSCRNLIAFTTDLRNEEERDLTHMVHIIDTEHPWDVYSVNSGHGCVSAGSRLLSADADGHIKCWSMTDHLANSWENTVGSMVEGDPVVALSWLHNGVKLALHVEKSGASNFGEKFSRVKFSPSLTLFGGKPMEGWIAVTISGLVTVSLLKPNGQVLTSTESLCRLRCRVALADVAFTGGGNIVVATSDGSSASPVQFYKVCVSVVNEKCKIDTEILPSLFMRCTTDPARKDKYPAITHLKFLARDMSEQVLLCASNQNNSIVECWSLRKEGLPVNNIFQQISPVVGDKQPMILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVANDTKFFPGLGLALAFHDGSVHIVHRLSLQMMAVFHGSSSQRPVDEQTIKRQRTTGPLVHFKAMQLSWTSLALAGIDSHGKLSMLRISPSMGHVLDMNTSLRHLLFLLEYCMVTGYDWWDILLHVQPNMVQNLVEKLHEEYTRQSAALQQVLATRIVAMKASLCKLSSSTIARVCDYHAKLFLIAISCTLKSLLRPHFLNTPDKSPGDRLTEICSKITDIDIDKVMINLKTEEFVLEMNTLQSLQQLIQWVGDFVLYLLASLPNQGSPVRPGHSFLRDGASLGMFRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWLCCREESHITEPDDTLIDECCLLPSQLLIPNIDWLPINDGIISKLQNKQLVRLQFGKAPGLIGHTVSSQFDAFVRYKDVKQKDENDTLETIPFFFLPRAPGQPKIDHLRRLHLGAYPTEECKSCTR
Length805
PositionTail
OrganismColinus virginianus (Northern bobwhite) (Tetrao virginianus)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Neognathae> Galloanserae> Galliformes> Odontophoridae> Colinus.
Aromaticity0.07
Grand average of hydropathy-0.014
Instability index43.12
Isoelectric point7.12
Molecular weight89928.25
Publications
PubMed=24621616

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14271
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     353.47|     117|     139|     446|     580|       1
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  446-  580 (170.48/148.50)	VLDMNTsLRHLLFLLEYcmvTGyDWWDILLHVQPNmvQ.NLVEKLHeEYTRQSAAL....QQVLATRIVamkaSLCKLSSSTI.ARVCDYHAKLFLiaisctLKSLLRPHFLNTPDKS....PGDRLTEIC....SKITDIDIDKVMIN
  587-  717 (182.99/111.30)	VLEMNT.LQSLQQLIQW...VG.DFVLYLLASLPN..QgSPVRPGH.SFLRDGASLgmfrELMVVIRIW....GLLKPSCLPVyTATSDTQDSMSL......LFRLLTKLWLCCREEShitePDDTLIDECcllpSQLLIPNIDWLPIN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.81|      39|     200|      78|     118|       2
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   78-  118 (65.82/48.01)	LL..SADADGHIKCWSM.TDHL.ANSWENTVGSMVeGD..PVVaLSW
  277-  321 (53.98/31.30)	LLcaSNQNNSIVECWSLrKEGLpVNNIFQQISPVV.GDkqPMI.LKW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14271 with Med16 domain of Kingdom Metazoa
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