<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14270

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWSDYQWAINMKRFFPRGATWDILNLAEALLEQAMIGPSPNPLILSYLKYAISSQMVSYSTVLTAISKFDDFSRDLCVQSLLEIMDMFCDRLSCHGRAEECIGLCRALMSALNWLLRCAAFYAEKVKEVLEQVAAEGQLKMCLERLEKMLGSTKNRALIHIAQLEETSSWNTVEQSLLKLEESLNSLSNSALRSQGDGCISLVKSIPTMLSVRSEQLNKTGFPTVHAVVLLEGTMNLTGEIQPLVEQLMMVKRMQRIPSPLFMLEIWKACFVGLIESPEGTEELKWTAFTFLKIPQVLVELKNYPHGDKDFTEDVNCAFEFLLKLTPLLDKADQRCNCNCMSLLLQECSKQGLLSEANMSNLTDKRKADREDAPQLQSAENANIQPNPRLILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFAWKFIKLNEFTKHISTENSKSAPVRALLFDISFLMLCHVAQTYGSEVILSESRPADEVPFFETWMLTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNSSEMKLVQMNWHEVCLSISAAILEILNAWENSVLTFESIQKITDNIKGKVCSMAVCAVAWLVAHVRMLGLDEREKSLQMIRQLATPLYGDNTLQFYNERVVIMSSILEHMCADVLQQTATQIKFPSTGMDTIPYWNLLPPKKPIKEVLTSVFTKVLEKGWVDSRSIHIFNTLLHMGGVYWFCNNLVKELLKETRKEHTLRAVELLYAIFCLDMQQLTLTLLGHILPSLLTDSSKWHTLMDPPGKALAKLSVWCALSSYSSHNKCQTSARQRKRHREDIEDYISLFPLDDTQPSKLMRLLSSNEEDANILSSPNRSMSSSLSASQLHAVSMRDPLNRVLANLFLLISSILGSKTAGTHTQFVQWFMEECVECLEQGSHGSILQFMPFTMVSELVKVSTMSSPKIVLAITDLGLPLGRRVAAKAIAAL
Length986
PositionTail
OrganismColinus virginianus (Northern bobwhite) (Tetrao virginianus)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Neognathae> Galloanserae> Galliformes> Odontophoridae> Colinus.
Aromaticity0.07
Grand average of hydropathy0.002
Instability index51.75
Isoelectric point6.30
Molecular weight110776.89
Publications
PubMed=24621616

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14270
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.34|      14|     300|     540|     594|       1
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  525-  538 (27.53/56.27)	WMLTCMPEEGKILN
  571-  584 (24.81/13.36)	WHEVCLSISAAILE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     250.81|      79|     115|       4|      87|       2
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    4-   87 (126.17/101.00)	VNLKQAILQA..WKERWSDYqWAINMKRFFPRGATWDILNLAEALLEQAMIGPSPNPLIlsylKYAISSQMVSYSTVLTAISKFDD
  118-  198 (124.63/85.50)	IGLCRALMSAlnWLLRCAAF.YAEKVKEVLEQVAAEGQLKMCLERLEKMLGSTKNRALI....HIAQLEETSSWNTVEQSLLKLEE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.74|      23|     302|     399|     439|       3
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  369-  391 (37.41/38.84)	LLSEANMSNLTDKRKADREDAPQ
  408-  430 (38.34/38.85)	LRAEPTVTNILKTMDADHSKSPE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     294.50|      90|     117|     618|     710|       4
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  618-  710 (140.09/104.00)	VAWLVAHVRMLGLDEREKSlQMIRQLATpLYGDNTLQFYNERVVIMSSILEHMCADVlQQTATQIKFPSTGMDTIPYWNLLPPKKPIKEVLTS
  738-  827 (154.41/100.80)	VYWFCNNLVKELLKETRKE.HTLRAVEL.LYAIFCLDMQQLTLTLLGHILPSLLTDS.SKWHTLMDPPGKALAKLSVWCALSSYSSHNKCQTS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.58|      20|     303|     279|     301|       6
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  279-  299 (31.83/30.84)	MLEIWKAcFVGLIESPEG....TEE
  307-  330 (30.75/15.78)	FLKIPQV.LVELKNYPHGdkdfTED
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.47|      24|      28|     461|     484|       7
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  461-  484 (42.42/28.24)	FAWKFIKLNEFTKHISTEN..SKSAP
  490-  515 (38.05/24.59)	FDISFLMLCHVAQTYGSEVilSESRP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14270 with Med24 domain of Kingdom Metazoa
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