<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14260

Description Uncharacterized protein
SequenceMSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINELNVTCEQHGLLILIFLFTDNHSKPMEIDGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNSGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPGTSNPNSNIMLASASFDSTVRLWDVDRGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGTLVHSYRGTGGIFEVCWNARGDKVGASASDGSVRSFTCCKCWVEVTLLKSVNKTYVCHIAFSGHGSRCRQLQTEMSTSVEYIGTVPALNAKR
Length510
PositionTail
OrganismCallipepla squamata (Scaled quail)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Neognathae> Galloanserae> Galliformes> Odontophoridae> Callipepla.
Aromaticity0.09
Grand average of hydropathy-0.222
Instability index39.51
Isoelectric point5.90
Molecular weight56015.35
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14260
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     383.22|      40|      40|     266|     305|       1
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  146-  181 (44.14/24.49)	S.NSGSTQLVLRHCirEG.GHDVP....S....NKD...........VTSLDWNSDG
  184-  222 (59.10/35.38)	L.ATGSYDGFARI...WT.EDGNLA..STLGQHKGP...........IFALKWNKKG
  224-  264 (30.15/14.30)	Y...........IL..SA.GVDKTT..IIWDAHTGEakqqfpfhsapALDVDWQNNT
  266-  305 (71.42/44.35)	F.ASCSTDMCIHVC..RL.GCDRPV..KTFQGHTNE...........VNAIKWDPSG
  308-  347 (68.19/42.00)	L.ASCSDDMTLKIW..SM.KQDTCV..HDLQAHSKE...........IYTIKWSPTG
  359-  398 (47.40/26.86)	L.ASASFDSTV.....RLwDVDRGVciHTLTKHQEP...........VYSVAFSPDG
  400-  439 (62.82/38.10)	YlASGSFDKCVHIW..NT.QSGTLV..HSYRG.TGG...........IFEVCWNARG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.30|      39|      55|      26|      70|       2
---------------------------------------------------------------------------
   26-   70 (47.53/60.68)	FTFgIESHISQSNINGTL.VPPAAlISILqKGLqyvEAEISINELN
   83-  122 (68.77/53.04)	FLF.TDNHSKPMEIDGDVeIPPNK.ATVL.RGH...ESEVFICAWN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14260 with Med16 domain of Kingdom Metazoa
Unable to open file!