Description | Mediator of RNA polymerase II transcription subunit 1 |
Sequence | MAPEYRVGVMSSLPAMTDRLESIARQNGLGSHLSANGTECYITSDMFYVEVQLDPTGLLCDVKVAHHGENPVVCIAEKDEKKNAFMFWNCGFAFVFLKKMDYIEHSAKPNVIPSLLVLVEDFAVLIFYSCCAAQRLKLMHLTLILLCVLSLSELSRIGATSEKQSLMCNRSEYILLFPPFTFREKNFDEFSKHLRGLVNLYKLPGDNKLKTKMYLALQSLELDLSKMAGMYWQATNANPLDKILHGSVGYLTPRSGGLLMNLKYYVSPYDLFEDGTGAPVILHENNVPRSLGMNVSVTVEGTMAMYKLPIAPLIMGSHPVDSKGTPSFSSITSANSVDLPACFFLKFPRPIPVSRAFIQKLQGCTGIPLFDTAPTFVPLYELITQFELSKEADPVPLNHNMRFYAVTRKVAWHHLSLESALAVCYCLVIALNTSWNKAQIVCQALPGQQHCYFLNKDAPLPDGRSLQGTLISKIAFQHPGRVPLILNLIRHQVAYNTLIGSCVKRTVLKEDSPGILQFEVCPLSDSCFSVSFQHPVNDSLVCVVMDVQDSTHVNCKLYKGLSDALICTDDFIAKVVQRCMSIPVTMRAIRRKAETIQADTPALSLIAETVEDMVKKNLPPASSPGYGMTTGSNPMSGTTTPTNTFPGGPITTLFNMSISMKERHDSVGHGEDFSKVSQNPILTSLLQITGNVGSAIGSSPTPPHHTPPPLSSPAGNTKNHPMLMNLLKENPPQDFSTLYGSSPLERQNSSSGSPRMEMGPGGSKQKKKKSRMPADKPKHQTEDDFQRELFSMDVDSQNPIFDVNMTADTLDTPHITPAPSQCSTPPTTYPQPIPHSQPGIQRMVRLSSSDSIGADVTDILSDIAEEASKLPATNEDCPPIGTPVRDSSSSGHSQSALFDPDVFQTNNSENPYTDPADLIADAAVSPNSDSSNHFFPDGVDFNPDLLNSQSQSGFAEEYFDESSQSGDTDDFKGYASQALSTLGVQVLGGDGGENKFKGSNQSDTVDFSIIAAASKALGSSDIMEHHSGGQSPLLNTGDLGKEKSQKRVKEGNGSGSNMAGSGIDGKPGKRSRTPSSDGKSKEKLPKRKKQETDGKSPSHSSSNRPFTPPASTGGSKSPGSSGRSQTPPGVATPPIPKITIQIPKGTVTVGKPSSHGQYTSSGSVTSSSSKSHHSHSSSSSSSSSSSTSGKIKSSKSEGSSGSKMSSSLYSSQGGSSSGPSKSSAQSVGKPGSSPITKHGLSSGSGSTKMKPQGKPSSLMNPSMSKPNISPSHSRPSGGSDKLASPMKPVPGTPPSSKAKSPISSGSGGSHMSGTGSSSSMKSSSGMGSSGSMSQKPPPSSNSSTASSSSFSSSGSSMSSSQNQHGSSKGKSPSRNKKPSLTAVIDKLKHGVVTSGPGGDDPMDGQMGPSSNSSSHTMSSKHNMSGGEFQGKREKSEKEKSKVSVSGGSVDSSKKTSDSKNVGSTGVAKIIISKHDGGSPSIKAKVTLQKPGEGGGDSLRPQMASSKSYGSPLISGSTPKHERCSPSHSKSPAYTPQNIDSESESGSSIAEKSYQNSPSSDDGIRPLPEYSSEKHKKHKKEKKKVKDKDRDRDRDRDKDRDKKKSHSIKPESWSKSPISADQSLSMASSAILSAERPSRASPEFLIGEEDDDLMDVALIGN |
Length | 1660 |
Position | Middle |
Organism | Callipepla squamata (Scaled quail) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Neognathae> Galloanserae> Galliformes> Odontophoridae> Callipepla. |
Aromaticity | 0.05 |
Grand average of hydropathy | -0.532 |
Instability index | 53.56 |
Isoelectric point | 8.75 |
Molecular weight | 176742.50 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364059 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP14252 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 13| 871.87| 84| 84| 1232| 1315| 1 --------------------------------------------------------------------------- 618- 680 (46.01/ 8.32) ..........................L....PPAS...SPG...................Y........GMttgsNP....MS...G...TT...........TPTN...T.FPG.G........PITTLFN.MSI......SM.K..ERhDS..V...GHG.ED......FS.KVS.QN.......................P 698- 761 (61.78/13.77) SSPTPP..HhtppPL.SSP.A.GNTKN....HPM...................................LM....N.....LL..KE...NP...........PQDF...S.TLY.GS.................................SP..LerqNSS.SG......SP.RMEmGP.......................G 762- 858 (65.67/15.11) GSKQKK..K.......KSR.M.PADKP....KHQT...EDDfqrelfsmdvdsqnpifdvN........MT....ADT...LD..TP...HI...........TPA.......PS.QCSTP.PTTYPQPIPH.SQP......GI.Q..RM.VR..L...SSSdSI......GA.DVT.D......................... 860- 934 (44.04/ 7.65) ..............L.SDI.A.EEASK....LPAT...NED...................C...............PP...IG..TPvrdSS...........SSGH...S.QSAlFDPDV.FQTNNSENPY.TDP......ADlI..AD.AA..V...SPN.SD......SSnHF............................ 936- 1005 (39.94/ 6.23) ................................PDGvdfNP....................D........LL....N.S...QS..QS...GF...........AEEYfdeS.SQS.GDTDD.F....KG.YA.SQA......LS.T..LG.VQ..V...LGG.DGgenkfkGS.NQS.DT.......................V 1007- 1062 (59.08/12.84) FSIIAA..A....SK.ALG.S........................................................S............DI...........MEHH......S..GGQ.....SPL...LN.TGD......LG.K..EK.SQkrV...KEG.NG.....sGS.NMA.GS.......................G 1063- 1131 (45.93/ 8.30) ........................IDG....KP.G...KRS...................R..............TPSsdgKS..KE...KLpkrkkqetdgkSPSH...S.............SSNRPF...TPP......AS.TggSK.SP..G...SSG.RS......QT.P.P.GV.......................A 1132- 1231 (69.65/16.48) TPPIPK..I....TI.QIP.K.GTVTV.......G...KPS...................ShgqytssgSV....TSS...SS..KS...HH...........SHSS...S.SSS.SSS.....S......S.T........SG.K..IK.SS..K...SEG.SS......GS.KMS.SSlyssqggsssgpskssaqsvgkpG 1232- 1315 (153.97/45.58) SSPITK..H....GL.SSG.S.GSTKM....KPQG...KPS...................S........LM....NPS...MS..KP...NI...........SPSH...S.RPS.GGSDK.LASPMKPVPG.TPP......SS.K..AK.SP..I...SSG.SG......GS.HMS.GT.......................G 1316- 1382 (73.19/17.71) SSSSMKssS....GMgSSG.S.MSQKP....PPSS...NSS...................T........AS....SSS...FS..SS...GS...........SMSS...S.QNQ.HG......S..................S.K..GK.SP..........SR......NK.KPS.LT.......................A 1383- 1450 (67.94/15.89) VIDKLK..H....GVvTSGpG.GDDPM....DGQM...GPS...................S................N...SS..SH...TM...........SSKH...N.M.S.GG.E......FQ...GkREK......SE.K..EK.SK..V...SV..SG......GS......V.......................D 1451- 1545 (71.36/17.07) SSKKTS..D....SK.NVG.StGVAKIiiskHDGG...SPS...................I........KA....KVT...LQ..KP...GE...........GGGD...SlRPQ.MASSKsYGSPL..ISG.STPkhercsPS.H..SK.SP..A...YTP.QN......ID.SES.ES.......................G 1546- 1625 (73.32/17.75) SSIAEK..S....YQ.NSP.S.SDDGI....RPLP...EYS...................S........EK....HKK...HKkeKK...KV...........KDKD...R.DRD.RDRDK..DRDKKKSHS.IKP......ES.W..SK.SP..I...SAD.QS......LS..M............................ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 151.11| 44| 104| 332| 379| 2 --------------------------------------------------------------------------- 332- 379 (77.97/56.26) TSANSVD.....LPA...CFFLKFPRPIPVSRAfiqkLQGCTGIPLFDTAPTFVPL 433- 484 (73.14/43.65) TSWNKAQivcqaLPGqqhCYFLNKDAPLPDGRS....LQGTLISKIAFQHPGRVPL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 88.21| 26| 104| 179| 204| 3 --------------------------------------------------------------------------- 179- 204 (47.50/30.72) PFTFREKNFD.....EFSKHLRGLVNLYKLP 279- 309 (40.71/25.30) PVILHENNVPrslgmNVSVTVEGTMAMYKLP --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) GFAEEYFDE 2) ILSAER 3) IPKITIQIPKGT 4) IRPLPEYSSEKHKKHKKEKKKVKDKDRDRDRDR 5) NKKPSLTAVIDKLKHGVV 6) RASPEFLIGEEDDDLMDVALIGN 7) SIKAKVTLQK 8) VAKIIISKH 9) YGSPLI | 953 1630 1135 1563 1375 1638 1480 1466 1508 | 961 1635 1146 1595 1392 1660 1489 1474 1513 |
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