<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14249

Description Uncharacterized protein
SequenceMGPAEELVRIAKKLDKMVARKSTEGALDLLKSLTGYTMTIQLLQTTRIGVAVNSMRKHCSDEEVVASAKILIKNWKRLLESSAPPKKEKDADGEKKEKEKRLDVPSPNEGVNPHAVKHPKSPAEKHREKHKERCGIQRDSADSRSSVSSSSSSPQKRPSGERRPSTGANPLPAPNSSRRSSSDSTGDRANSNKGKVETPRTPGSPPFSPSVCLLAPCYLTGDSVRDKCIEMLTAALRMDGEQDGVVRGTRPQRGRKWELKSTDMKYRNRVRSRISNLKDPKNPNLRRNVLCGAIAPALIARMTAEEMASDELKELRNAMTQEAIREHQMAKTGGTVTDLFQCGKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKVRDGLEELPCIHEFCSYIRGYHSYTYRYLSYIHGYHSCIRGYHSYTYRYLSYIHGYHSPITG
Length440
PositionUnknown
OrganismCallipepla squamata (Scaled quail)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Neognathae> Galloanserae> Galliformes> Odontophoridae> Callipepla.
Aromaticity0.05
Grand average of hydropathy-0.838
Instability index49.09
Isoelectric point9.54
Molecular weight49395.65
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
nucleic acid binding	GO:0003676	IEA:InterPro
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14249
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.85|      20|      20|     396|     415|       1
---------------------------------------------------------------------------
  396-  415 (47.93/28.87)	IRGYHSYTYRYLSYIHGYHS
  417-  436 (47.93/28.87)	IRGYHSYTYRYLSYIHGYHS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.86|      29|      29|      94|     122|       2
---------------------------------------------------------------------------
   94-  122 (51.20/29.79)	EK.KEKEK.RL....DVPSPNEGVNPHAVKHPKSP
  124-  158 (33.66/17.12)	EKhREKHKeRCgiqrDSADSRSSVSSSSSSPQKRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.65|      12|      15|     255|     268|       4
---------------------------------------------------------------------------
  255-  268 (19.08/18.07)	RKWELKstDMKYRN
  273-  284 (22.56/13.81)	RISNLK..DPKNPN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.77|      21|      27|     328|     348|       8
---------------------------------------------------------------------------
  328-  348 (36.92/21.75)	QMAKTGGTVTDLFQCGKCKKK
  356-  376 (37.85/22.45)	QTRSADEPMTTFVLCNECGNR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14249 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EMLTAALRMDGEQDGVVRGTRPQRGRKWELKSTDMK
2) KRLLESSAPPKKEKDADGEKKEKEKRLDVPSPNEGVNPHAVKHPKSPAEKHREKHKERCGIQRDSADSRSSVSSSSSSPQKRPSGERRPSTGANPLPAPNSSRRSSSDSTGDRANSNKGKVETPRTPGSPPFSP
230
76
265
209










Molecular Recognition Features






MoRF SequenceStartStop




NANANA