<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14243

Description Uncharacterized protein
SequenceMTAAPAPSPQQIRDRLLQAIDPQSNIHNMVAVLEVISSLEKYPITKEALEETRLGRLINEVRKKTSNEELAKRAKKLLRNWQKLIEPVTPSEAVPRALPNPPGSANGGAHNCKAEAALPAAAGPKPISELKSRNDIQKLSSPKAEKLGNRKRKGEHRDGHQGPPAPKVSKVSHEILQNSSPPPTNGIGGSPENFPSPVDVNLHAGPESSRTELSENDKHSKIPVNAVKPHTSSPGLVKPSSTSSLLKTAVLQQHEKSEESTGSHQPKSPRCSSFSPRNVRHDTFARQHSTYSPKDSMPSPSQRSQFLDTAQVPSPPPSLMQPSTPPMPAKRLELSQQPAPEASQHWQEQQVAADSQQRHTAPSCKASSHPGESLASHVGFSQDASKMDSDDAASGSDSKKKKRYRPRDYTVNLDGHVTEGGVKPVRLKERKLTFDPMTGQIKPLTPKDPLQVEIPALTEQHRTETEKQEQKPNLQSPFEQTNWKELSRNEIIQSYLNRQSSLLSSSGVQTPGAHYFMSEYLKQEESTRKEARKTHVLAPNSKPTDLPGVTREVTGDDLNRIREHNWPGVNGCYDTQGNWYDWTQCISLDPHGDDGRLNILPYVCLD
Length606
PositionUnknown
OrganismCallipepla squamata (Scaled quail)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Neognathae> Galloanserae> Galliformes> Odontophoridae> Callipepla.
Aromaticity0.04
Grand average of hydropathy-0.948
Instability index64.29
Isoelectric point9.00
Molecular weight66834.90
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14243
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     128.88|      22|      22|     292|     313|       1
---------------------------------------------------------------------------
  233-  252 (28.30/10.82)	SP..GL..VK.PS..STSSLLKTAVLQ
  268-  291 (31.53/12.90)	SPRCSS..FS.PRnvRHDTFARQHSTY
  292-  313 (39.54/18.06)	SPKDSM..PS.PS..QRSQFLDTAQVP
  314-  338 (29.50/11.59)	SPPPSLmqPStPP..MPAKRLELSQQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     197.42|      66|      80|      68|     135|       2
---------------------------------------------------------------------------
   59-  127 (104.84/49.18)	NEVRKKTS........nEELAKRAKK.LLRNWQKliEPVTP..SEAVPRALPN...PPGSANGGA.HNCKAEAALPAAAGPKPI
  128-  209 (92.58/39.24)	SELKSRNDiqklsspkaEKLGNRKRKgEHRDGHQ..GPPAPkvSKVSHEILQNsspPPTNGIGGSpENFPSPVDVNLHAGPESS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.28|      14|      15|     354|     367|       3
---------------------------------------------------------------------------
  354-  367 (25.63/13.53)	DSQQRHTAPSCKAS
  372-  385 (22.65/11.21)	ESLASHVGFSQDAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     111.92|      26|     174|     395|     420|       4
---------------------------------------------------------------------------
  395-  420 (45.40/33.20)	GSDSKKKKRYRPRDYT..VNLDG...HVTEG
  530-  556 (26.88/16.18)	..EARKTHVLAPNSKP..TDLPGvtrEVTGD
  571-  595 (39.64/27.90)	GCYDTQGNWY...DWTqcISLDP...HGDDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.67|      20|      22|     459|     478|       6
---------------------------------------------------------------------------
  441-  460 (27.54/10.28)	IKPLTPKDPLQVEIPALTEQ
  461-  480 (33.13/13.55)	HRTETEKQEQKPNLQSPFEQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14243 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) TRKEARKTHVLAPNSKPTDLPGVTREVTGDDLNRI
2) VTPSEAVPRALPNPPGSANGGAHNCKAEAALPAAAGPKPISELKSRNDIQKLSSPKAEKLGNRKRKGEHRDGHQGPPAPKVSKVSHEILQNSSPPPTNGIGGSPENFPSPVDVNLHAGPESSRTELSENDKHSKIPVNAVKPHTSSPGLVKPSSTSSLLKTAVLQQHEKSEESTGSHQPKSPRCSSFSPRNVRHDTFARQHSTYSPKDSMPSPSQRSQFLDTAQVPSPPPSLMQPSTPPMPAKRLELSQQPAPEASQHWQEQQVAADSQQRHTAPSCKASSHPGESLASHVGFSQDASKMDSDDAASGSDSKKKKRYRPRDYTVNLDGHVTEGGVKPVRLKERKLTFDPMTGQIKPLTPKDPLQVEIPALTEQHRTETEKQEQKPNLQSPFEQTNW
527
88
561
483










Molecular Recognition Features






MoRF SequenceStartStop




1) IRDRLL
2) RPRDY
12
405
17
409