<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14198

Description Uncharacterized protein
SequenceMAGKSKPLDHWRSYFRAANCDIFDIIDRAIAVAAADCPQEFRLRRDRIAERLFACRLARCSGCDRVELAIPVGEDEEEEGRDGCGAKPSGSVSAGKSGSKESKVTSSRRDDDREQQGELFVSNFSYGEAEALTDEIEEESKVVEEVLRIKELLVNSQEQSESLLYESLRRLQLMALTVGTLKETGIGKAVNRLRKHGSKDISSLVQTLISGWKAMVDDYYNTAPTVAEPESTPDSVKNPSTIDDDEEEEEEEGLPSPPMDEGAFFATQTGPIELSQFFDGMDDDGNPRTSGEFIKNRENGRRQSMSMEKQKPRQTISPVNKERGPQIKKRENVMMPNRPANDNPRPMRRSEPSPEQKFKKETKPQQKRSDAAVVQKRQLGNPQGEMMPSDEVSKQMKLEATKRRLQESYQQVEKAKKQRTIQVMDLHDLPKQKAAPKNFYPRPGMQNRNWANGRR
Length455
PositionUnknown
OrganismPunica granatum (Pomegranate)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Lythraceae> Punica.
Aromaticity0.05
Grand average of hydropathy-1.010
Instability index63.04
Isoelectric point6.00
Molecular weight51458.09
Publications
PubMed=28654223

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14198
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     184.58|      37|      37|     311|     347|       1
---------------------------------------------------------------------------
  287-  305 (24.97/ 9.62)	.......P..RTSGEFIKNREN...GRR......QS..M
  311-  347 (69.87/39.12)	KPRQTISPVNKERGPQIKKRENVMMPNRPANDNPRP..M
  353-  387 (48.14/24.84)	SPEQKF...KKETKPQQKRSDAAVVQKRQLG.NPQGemM
  416-  443 (41.60/20.55)	KKQRTIQVMDLHDLPKQKAA........PKNFYPRP...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.43|      16|      30|     118|     135|       2
---------------------------------------------------------------------------
  118-  135 (22.04/19.57)	ELFVSnfSYGEAEALTDE
  151-  166 (26.39/15.65)	ELLVN..SQEQSESLLYE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     160.01|      48|     169|      64|     111|       3
---------------------------------------------------------------------------
   64-  111 (82.28/37.06)	DRVELAIPVGEDEEEEGRDGCGAKP..SGSVSAGKSGSKE.SKVTSSRRDD
  234-  284 (77.73/34.67)	DSVKNPSTIDDDEEEEEEEGLPSPPmdEGAFFATQTGPIElSQFFDGMDDD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14198 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EEEGRDGCGAKPSGSVSAGKSGSKESKVTSSRRDDD
2) YNTAPTVAEPESTPDSVKNPSTIDDDEEEEEEEGLPSPPMDEGAFFATQTGPIELSQFFDGMDDDGNPRTSGEFIKNRENGRRQSMSMEKQKPRQTISPVNKERGPQIKKRENVMMPNRPANDNPRPMRRSEPSPEQKFKKETKPQQKRSDAAVVQKRQLGNPQGEMMPSDEVSKQMKLEATKRRLQESYQQVEKAKKQRTIQVMDLHDLPKQKAAPKNFYPRPGMQNRNWANGRR
77
220
112
455










Molecular Recognition Features






MoRF SequenceStartStop




1) EQKFKKETKPQQKRSDAAVVQKR
2) PMDEGAFFATQTGPIELSQFFD
3) PRPMRR
4) QVMDLHDLPKQKAAPKNFYPRPGMQNRNWANGR
355
258
344
422
377
279
349
454