<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14194

Description Uncharacterized protein
SequenceMANNPQFSGFQPVRLPVAGSTDPPRSYAPPFPVQSFTAVPAANVGFPSIPQQPQFHSSVLPPRPQYTVQNALLPPGISVPISQTNNQVASESPYPQLIAPPLTNFVPSSIGLGAPLSSSFTFSPHGLQNQANLAAPRPAVQYPPMSQPHVSSVSSGDQSRLASESSPGSSIKPITDQSSASSAAAAEPNARPTPGREGPIDWIEHTSPDGRRYYYNKKTKQSSWQKPFELMTAIERADASTDWREYKSADGRMYYYNKVTKQSKWEMPMELKLARECITKSDVIETPSEMGVANEAPKSLEVSSLKSERTASIPATLEASTSDAEPAIVSTSSPLPTVNSAATFTAPVNEVSPDHSKQAAVAAAETAEAATETVDVFPMPMANPDDLAAQKDLGSSEIVSAPEKASEMASALEKAKDDEIIDEKAERTLEDKLVNHEPLPYANKLEARNAFKALLESANVGSDWTWERAMRVIITDKRYGALKSLGERKDTFNEFVSQRKKQEAEERRLKQKKAREDFKKMLEESKELTSSSKWSKIVRLFEDDERFKAVERERDRQELFDDYIDELEKQERAKAVEERKRSIMEYRQFLESCSFITSSSQWRKVQNRLEADERCSRLEKIDRLEIFQEELRKVERKNRDEFRKLMDEHIASGMLTAKTHWHDYHMKVKDLPAYIAVSSNTSGSTPEDLFEDVVEELAKQYEENKAQIEDALKLRKVEVSPTWTLEDLKAAIADDLRGTPISEINFKLALDELLDKIRRKEEKKRKRMGDKFFDLLHSVREITVSSTWEDCKHHVERSHEYSSIKDENLCQEIFEEYITALKEKEKEYERRHKEDKERERERYGRDGRSWKDRRGKDRHDREEEESRDDGVDDDNTGAISDKRKKSSSKDKDREKKHHKRRHSAPDNLDETDRDHSKRSHKHSSDHKKSKRGSSPESEGEARHKKQKRDHRKGSHRSSNREELEDGEFGS
Length970
PositionUnknown
OrganismPunica granatum (Pomegranate)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Lythraceae> Punica.
Aromaticity0.06
Grand average of hydropathy-1.022
Instability index57.37
Isoelectric point6.10
Molecular weight110407.44
Publications
PubMed=28654223

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14194
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     489.53|      59|      61|     780|     838|       1
---------------------------------------------------------------------------
  465-  515 (56.79/27.23)	.......TW..ER..AMRVIITDKRY...GAL.KSLGERKDTFN.EFVSQR..KKQEAE.ERRLK..QKKAR
  526-  586 (68.85/34.58)	KELTSSSKW..SK..IVRLFEDDERF...KAV.ERERDRQELFD.DYIDELekQERAKAVEERKR..SIMEY
  594-  648 (54.66/25.93)	SFITSSSQW..RK..VQNRLEADERC...SRLeKIDRL..EIFQ.EELRKV..ERKNRDEFRKLM..DE...
  655-  713 (52.06/24.35)	..LTAKTHW..HD..YHMKVKDLPAYiavSSN.TSGSTPEDLFE.DVVEEL.....AKQYEENKAqiEDALK
  715-  765 (49.19/22.60)	RKVEVSPTWtlED..LKA............AI.ADDLRGTPISEiNFKLAL..DELLDKI..RRK..EEKKR
  780-  838 (99.13/53.04)	REITVSSTW..ED..CKHHVERSHEY...SSI.KDENLCQEIFE.EYITAL..KEKEKEYERRHK..EDKER
  845-  895 (56.62/27.13)	RD...GRSW..KDrrGKDRHDREEEE...S...RDDG....VDD.DNTGAI..SDKRKKSSSKDK...DREK
  901-  947 (52.23/24.45)	RHSAPDNLD..ET..DRDHSKRSHKH...SS...DHKKSKR.........G..SSPESEGEARHK..KQK..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     157.67|      39|      40|     197|     235|       2
---------------------------------------------------------------------------
  197-  235 (80.45/46.92)	EGPIDWIEHTSPDGRRYYYNKKTKQSSWQKPFELMTAIE
  238-  276 (77.22/44.76)	DASTDWREYKSADGRMYYYNKVTKQSKWEMPMELKLARE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.12|      23|      24|     144|     167|       3
---------------------------------------------------------------------------
   75-   98 (32.28/20.47)	PGISVPISQTNNQVASESPyP.....QLI
  148-  175 (34.84/18.00)	PHVSSVSSGDQSRLASESS.PgssikPIT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     159.45|      46|      47|     296|     342|       4
---------------------------------------------------------------------------
  283-  326 (67.53/34.44)	.VIETPSEMGVANEA.....PKSLEVSSLKSERT........ASIP..A.TLEASTS..DAEP
  327-  378 (56.67/28.93)	AIVSTSSPLPTVNSAatftAPVN.EVSPDHSKQA........AVAA..AeTAEAATEtvDVFP
  397-  447 (35.25/14.56)	EIVSAPEKASEMASA..leKAKDDEIIDEKAERTledklvnhEPLPyaN.KLEA.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.13|      12|      47|       3|      14|       5
---------------------------------------------------------------------------
    3-   14 (24.26/13.04)	NNPQF.SGFQPVR
   51-   63 (17.87/ 7.67)	QQPQFhSSVLPPR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14194 with Med35 domain of Kingdom Viridiplantae
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