<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14173

Description F-box-like/WD repeat-containing protein TBL1X
SequenceMSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREKLAQQQASAAAAAAATAATAGATTTAVSQQNTPKNGEATVNGEENGAHAINNHSKPMEIDGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNSSSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPGTSNPNSNIMLASASFDSTVRLWDVDRGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGTLVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK
Length523
PositionTail
OrganismLonchura striata domestica (Bengalese finch)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Neognathae> Passeriformes> Passeroidea> Estrildidae> Estrildinae> Lonchura.
Aromaticity0.07
Grand average of hydropathy-0.294
Instability index36.66
Isoelectric point5.40
Molecular weight56585.36
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14173
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     365.67|      40|      40|     331|     370|       1
---------------------------------------------------------------------------
  174-  207 (39.86/16.68)	..LRGHESE...........VFICAWNPVS.........dlL.ASGS.GDSTARIWNL.......
  233-  268 (39.28/16.35)	.S....NKD...........VTSLDWNSDG.........tlL.ATGS.YDGFARI.WT.EDGNLA
  269-  299 (39.23/16.32)	STLGQHKGP...........IFALKWNKKG..........nY............ILSA.GVDKTT
  300-  351 (52.12/23.74)	IIWDAHTGEakqqfpfhsapALDVDWQNNT..........tF.ASCS.TDMCIHVCRL.GCDRPV
  352-  393 (62.60/29.78)	KTFQGHTNE...........VNAIKWDPSG.........mlL.ASCS.DDMTLKIWSM.KQDTCV
  394-  442 (47.18/20.90)	HDLQAHSKE...........IYTIKWSPTGpgtsnpnsnimL.ASAS.FDSTV...RLwDVDRGV
  445-  486 (57.84/27.04)	HTLTKHQEP...........VYSVAFSPDG..........kYlASGS.FDKCVHIWNT.QSGTLV
  487-  518 (27.57/ 9.60)	HSYRG.TGG...........IFEVCWNARG........dkvG.ASASdGSVCV............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.62|      22|      22|     127|     148|       2
---------------------------------------------------------------------------
  105-  123 (19.05/ 9.80)	...QQQASAAAAAAATAATAGA
  127-  148 (35.01/24.35)	AVSQQNTPKNGEATVNGEENGA
  150-  171 (34.55/23.93)	AINNHSKPMEIDGDVEIPPNKA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14173 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AGATTTAVSQQNTPKNGEATVNGEENGAHAINNHSKPMEIDGDVEIPPNKAT
121
172










Molecular Recognition Features






MoRF SequenceStartStop




NANANA