<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14122

Description Putative mediator complex subunit
SequenceMAGQGHQFPGNFQGNAGAMRTGFGGGPMGNQMQAMPNQLTGVMGGPMGNAGMVGMGNQMVPPYGAAMPGQMGNMSMGNQGMGVGVGTGPAGLGPQAVQQAGMQVAAVQAAAPPPAPVNHPPQNKEFNTASLCKFGQETVQDIVSRTQDVFQTLKAIQPPNGTQHGENASNDKKAKMQEQLRTIRLLFKRLRLIYEKCNETCQGMEYTHMESLIPLKDEAENKALDERRNTETYRQVLEENKELTEQVVLKNKQLREVITNLRTIIWEINVMLTMRKS
Length277
PositionHead
OrganismDanaus plexippus plexippus
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Lepidoptera> Glossata> Ditrysia> Papilionoidea> Nymphalidae> Danainae> Danaini> Danaina> Danaus> Danaus.
Aromaticity0.04
Grand average of hydropathy-0.534
Instability index32.30
Isoelectric point8.74
Molecular weight30100.20
Publications
PubMed=22118469

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14122
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     118.32|      22|      36|      43|      64|       2
---------------------------------------------------------------------------
   43-   64 (48.21/21.74)	MGGPMGNAGMVGMGNQMVPPYG
   67-   80 (31.28/11.76)	MPGQMGN...MSMGNQ.....G
   81-  101 (38.83/16.21)	MGVGVG.TGPAGLGPQAVQQAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      97.43|      32|      36|     130|     165|       3
---------------------------------------------------------------------------
  110-  142 (27.96/11.71)	..........AA.PPPAPVNHPpqnkefntaSLCKFGQETVQDI
  145-  183 (42.56/30.86)	RTqdVFQTLKAI.QPPNGTQHG...enasndKKAKM.QEQLRTI
  184-  218 (26.92/ 8.80)	RL..LFKRLRLIyEKCNETCQG..meythmeSLIPLKDE.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.63|      22|      27|     221|     244|       4
---------------------------------------------------------------------------
  221-  244 (31.90/29.99)	NKALdeRRNTETYRQVLEE.NKELT
  251-  273 (33.74/24.09)	NKQL..REVITNLRTIIWEiNVMLT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14122 with Med30 domain of Kingdom Metazoa
Unable to open file!