<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14114

Description Uncharacterized protein
SequenceMDNNNWRPAQAEPNMDGVDWRTQLQPDSRQRIVSKIMETLKRHLPISGPDGLLELNKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKSQANVANSVPLNSAGGSQNPQDPASHSMQSQVRNQGQSQIPLPNQSQARQQLLPQNIQNTIANAGVQGSATLSSALSSATSLTQSSMPNAAGQGSMQSGMTQNSVGNSVGQGVPSNIFATSQRPIQGRQHPQQAVSQQQQQQAQNPQQFMYQQQLQHHIFKQKQIQGNIQPSLMQSHIQQQPQQQQQNLLQQTQLQPSQQSQMQISSGLQSIQPTLQQTQPSVMQSASNSSVQQNQQSTVAQSTPSVLQQHPQSVLRQQQQPQQSMHQQTPVLHQQQTSMSQQPVLPSQQQQQQLNATNLQQNQLLGQQSNVSELQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQRLLNQQNNLANLQQQQLLGQQNNISNLHPQQLGQQNSISGLQQQQQQLLGTGTQSGVSNMQPHQQPMHIMHQQAKVQQQQNPQTSSNLLQIQGQHAQSQPAQQQLMSQHQSQPTQIQQQLGLPQQPNPLQKEMQQRLQTSGSSMLNSQNLLDQNQKQVFHSQRAPEASSTSIDSTAQTGQNAVDWQEEVFQKIKSMREMYLPDLIDMQQKISLKCQQHESLPQQPKSEQIDRLKIFKGMLDKMMIFLNMPKSSIMPGYKEKLGSYEKQIVNIINSNRPRKPVSAQQQSQPTTGGHPLSIQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQLQSQIPQLQQHDNQMNSQMQPVILQNSVSSMQSTSVTGMNHSAIPPLSNHLGVSTAQTSMMNSLQPGSTLESGQGNTSSSLQQVGVGSLQQSSVNAPQHANVNTMSQSGVNGLQPNINSLQMNSNMLQNPHMKQQIQQQRQMHQQLINHKQQQQILQQQQQQHPQLQQQFQQLAHQSQKPQQSSQLQAHQMPQLHQINEDLKVRQGMGFKPGMTQQHHSTGLRTPYNNQLKAGASFPISSPQLLQVASPQISQHSSPQIDQQSLLTSLTRTGTPLQSANSPFIVPSPSTPLAPSPIPGDPEKQTSGVSSLSNAGNIGQPQNSAALAQAQSLAIGTPGISASPLLAEFTGTDGNQVTASTIIKSSVSEQPVERLIKVVKSVSPKAFSASVSDIGSVISMIDRIAGSAPGNGSRAAVGEDLVAMTRCRMQARNFITQDGSSATKKMRRHTSAMPLNTMSSAGSANDSFKQLIGLEASDLESTATSRMKRPRVEANHVLLEEIREINQRLIDTVVDVSDEDVHPTAAAGAAEGGEGTVVKCSYNAVALSPSLKAQYASAQMSPIQPLRLLVPKNYPNCSPILLDKFPVELSKETEDLSVKARSRFSISLRSLSQPMSLKEMVRTWDVCARAVISDYAQQRGGGTFSSRYGTWENCVSAA
Length1437
PositionTail
OrganismMacleaya cordata
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Papaveraceae> Papaveroideae> Macleaya.
Aromaticity0.03
Grand average of hydropathy-0.861
Instability index77.91
Isoelectric point9.55
Molecular weight159103.33
Publications
PubMed=28552780

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14114
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|    1226.37|     306|     340|     119|     458|       1
---------------------------------------------------------------------------
  109-  409 (393.31/79.05)	.............................................NPQDPASHSMQSQVRNQgQSQIplpnqSQARQQLLPQniQNTIanAGVQGSAtlSSALSSATsltQSSMPN.AAGQGSMQSGMTQNSVGNSVGQGVPSNIFatsqrPIQGrQHPQQAVSQQQ...QQQAQnPQQFmyQQQLqhhifkqkqiQGNIQPSLMQSHIQQQPQQ......QQQNLLQQTQLQ..PSQQSQMQISSGLQSIQPTLQQTQPSVMQSASNSSVQQNQQSTV...........AQST...............PSVLQQ.HPQSVLRQQQQ...PQ..........QSMHQQTPVLHQ.QQT.........S...........MSQ......QPVLPSQQ......QQQQLNATNLQQNQLLGQQSNVSELQQQQ
  410-  734 (480.77/73.05)	QQQQQ....QQQQQ..QQQQQQQQQQQQQQQQQQQQQQQQQQRLLNQQNNLANLQQQQLLGQ.QNNI.....SNLHPQQLGQ..QNSI..SGLQQQQ..QQLLGTGT...QSGVSNmQPHQQPMHIMHQQAKVQQQQNPQTSSNLL.....QIQG.QHAQSQPAQQQlmsQHQSQ.PTQI..QQQL..........GLPQQPNPLQKEMQQRLQTsgssmlNSQNLLDQNQKQvfHSQRAPEASST...SIDSTAQTGQNAV...DWQEEVFQKIKSMR...........EMYL...............PDLIDM.QQKISLKCQQHeslPQ..........QPKSEQIDRLKI.FKGmldkmmiflN...........MPK......SSIMPGYKeklgsyEKQIVNIIN..SNR...PRKPVSAQQQSQ
  745-  921 (239.90/30.99)	QQQQQ....QQQQQ..QQQQQQQQQQQQQQQQQQQQQQQHQQQL........................................................................................................................................................................................QSQIP..QLQQHDNQMNSQMQ...PVILQNSVSSMQSTS...VTGMNHSAIpplsnhlgvstAQT.................SMMNSlQPGSTLESGQG...NT..........SSSLQQVGVGSL.QQS.........SvnapqhanvntMSQsgvnglQPNINSLQ..........MNS.NMLQNPHMKQQ.....IQQQR
  922- 1049 (112.39/ 8.73)	QMHQQlinhKQQQQilQQQQQQHPQLQQQFQQLAHQSQKPQQSSQLQAHQMPQLH...............................................................................................................................................................................................................................................qinedlkvrqgmgfkPGMTQQ.HHSTGLRTPYN...NQlkagasfpisSPQLLQVASPQIsQHS.........S.........pqIDQ......QSLLTSL....................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.49|      16|      16|    1363|    1378|       3
---------------------------------------------------------------------------
 1363- 1378 (25.31/18.98)	KFPVELSKETEDLSVK
 1382- 1397 (26.18/19.95)	RFSISLRSLSQPMSLK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14114 with Med15 domain of Kingdom Viridiplantae
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