<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14112

Description Uncharacterized protein
SequenceMKENKNSQRKLSSHTMQSQVPNQGKSQISFPDPSQARQQLLPQIIHNTIENAGVQGATLSSAMPSVTSRPQSSMSNTADQSSNMPSGMIQNSAGNSVGQGVPSNAIPTSQGYILGSQDPQRAVSQQQPQQSLNSQQFPHQILKQKQQPSPMQSHIQQEPQQQQHSLLQQTQLQSSQQSLMQISSGFQSSKPTLQQTQTSAMQSASPSGLQQNQHSAVSQTISSVLQQHQQLVLRQHQQAQQSVQQQTPVLPQQQTSTSQQSVLPSQQHHQQINATNLNLHLQKLGQQNSMSELQQQQQQLLGTETQSGIPNMQPHQQPMHINVQQQQNPNLLQIQGQHEQSQPAQQQLMSQHQSQPTQMQQQFPQQPNPLQRDMQQRIQTSGSSMLNPQNVMGQKQEFHSQRALPEASSNSTAQTGHNAVDWQEEVYLKIKSMREMYLTDLSEMHQKISLKCQQYESLSQPSKSEQINRLKMIKDELYKLVVFLNMSKNDIMPGYKEKLDYYENLILNYLNAKRTQRPVISQQQIRPPGDHPLSMQQQQHQQQQQSQIPELQQHDHKMNSQIQSAILQNSVSSMQSTSVTGMNHGARPSLSNHLGVSTVQTSMMNSLQPGSTLESGQGNTSSSLQQVRVGSLQQSSVNAPHQANVNTMSESGLNGLQPNINSQQINPNMIQHPHLKQPLQQKRQMHQQLSNQKQQQILQQQHPQQKQQLQQFAHQPQKLQQSSQLQAHPMPQLHQMNEDLKVRQGMGFKPGMSATGLRTLYNHQLKAGTFFPISSPQLLQVAPPQISQHSSPQIDQQSLLPSLIKTGTPLQSADSPFIVPSPSTPLVPSPVPGDLERQPSGVSSFSNAGNIGQPQNTAALAEVQSLAIGTPGISASSMLAEFTGPDGNQVTASTNIKSSVTEQPFERLIKAVKSASPKALSAAVSDMWSVISMTDRIAGSAPGNGSRAVVGEDLAAMTKCRMHATNFKTQDGNSATKKMEHHTSAMPLDAMSSAGSVNDSFKHLIGLESSDLESTVTSRMKRTRAEANNVLLEEIRELNQHLIDTVVDISDEDVHLTAAAGAQGGEGTVVKCSYTAVSLSSDLKSHYNSAQMSPILPLRLLVPTNYPNCSPILLDEFPVIMSTVTEDLSVKTKLRFSIAICSLSQPMSLKEIVRTWDKCVRDVIIEYAQQRGGGTFSSRYGTWKYCNDPNLGYGQGTSDENSPH
Length1204
PositionTail
OrganismMacleaya cordata
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Papaveraceae> Papaveroideae> Macleaya.
Aromaticity0.03
Grand average of hydropathy-0.728
Instability index71.82
Isoelectric point8.67
Molecular weight132792.03
Publications
PubMed=28552780

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14112
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            10|     676.03|      68|      68|     109|     176|       1
---------------------------------------------------------------------------
   16-   83 (56.88/11.06)	................................MQ.....SQVPNQGKSQ.ISfPDPSQARQQLLPQIIHNT.IEnagvqgatlSS...A.MPS.V..TS.RP......QS...S.MS.NTADQSSN
  109-  176 (130.65/35.73)	SQGY...........................ILG.....SQDPQRAVSQ.QQ.PQQSLNSQQFPHQILKQK.QQ.........PS...P.MQSHI..QQ.EP......QQQQHSLLQ.QTQLQSSQ
  183-  220 (51.11/ 9.13)	SSGF.............................Q.....SSKP..TL...QQ.TQTS.AMQS..........AS.........PS...G.L.................QQNQHSAVS.QT......
  222-  278 (63.00/13.11)	..SS...........................VL......QQHQQLVLRQhQQ.AQQSV.QQQTP..VLPQQ.QT.........ST...S.QQSVL......P......SQQHHQQIN.ATNLN...
  281-  342 (50.31/ 8.87)	................................LQ.....KLGQQNSMSElQQ.QQQ.........QLLGTE.TQ.........SG..iPnMQPH....Q.QPmhinvqQQQNPNLLQiQGQHEQSQ
  345-  385 (56.55/10.95)	Q..........................................QQLMSQ.HQ.SQPTQMQQQFP........QQ.........PN...P.LQRDM..QQ.RI......QTSGSSM...........
  475-  552 (57.90/11.40)	DELYklvvflnmskndimpgykekldyyenlILN.....YLNAKRT....QR.P...VISQQ...QIRPPG.DH.........PL...S.MQ.....QQ.QH......QQQQ......QSQIPELQ
  616-  683 (69.06/15.14)	GQGN...........................TSS.....SLQQVRVGSL.Q...QSSVNA...PHQANVNT.MS.........ESglnG.LQPNInsQQiNP......NMIQHPHLK.Q.PLQQKR
  687-  740 (80.01/18.80)	QQ..............................LS.....NQKQQQILQQ.QH.PQQKQQLQQFAHQ..PQKlQQ.........SS...Q.LQAH.......P......MPQLH.......QMNEDL
  743-  800 (60.55/12.29)	RQG.............................MGfkpgmSATGLRTLYN.HQ.....LKAGTFFPISSPQL.LQ.........VA...P............P......QISQHSSPQ.IDQ.QSLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.87|      35|      68|     807|     846|       7
---------------------------------------------------------------------------
  821-  877 (49.86/31.31)	SPSTPLVPSPVPGDLERQPSGVSSFSnagnigqpqntaalaevqslaiGTPGISASS
  891-  925 (54.00/26.39)	TASTNIKSSVTEQPFERLIKAVKSAS......................PKALSAAVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.17|      17|      22|     558|     575|      15
---------------------------------------------------------------------------
  558-  575 (25.90/16.72)	MNSQIQSAiLQN..SVSSMQ
  582-  600 (26.26/12.38)	MNHGARPS.LSNhlGVSTVQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14112 with Med15 domain of Kingdom Viridiplantae
Unable to open file!