<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14105

Description DnaJ domain
SequenceMECNRDEATRAKEIAERKFTAMDISGAKKFALKAQNMYPNLEGLSQMLTTLDVYLSAENKMGGEADWYGILGARPFDDDETVKKQYRKLALMVHPDKNKSIGADGAFKLISEAWNLLSDKTKRVAYDQKRFPKTSQQKVPTTSGGPSVPEANGFTTSTSSNARVRKCTTHAGPTAVPASSCEGPSVPDANGFTNSTTSNVGVHKSGIPSGPTTAQASSHPSKPDTFWTACVHCMIKYEYQLVHLNNNCLCSNCHKPFLAVEIPTRPSNGSNSSTTQQHQNSKHPTTNKKTRAPVRNTAAVPKIRPMVTRSHNPINRTSSQHDSAAGVGNATAAQAANVAQQQAYEIAKRTASGLSVPGSGPNLKGERPVKRRRGVDGGGGTDYRGKMASVSSGRGTRSGIASGCKQGGPETGRANQSSSHLKTLPRLFSSTIRPEARPYHLVSYQQHLLQVLVSDQKAPMSNGKSIQELAVEGQKHLEETIEAAFQILSSMNDELCNPALWSTTSAAASHSSNGVSGDASDSSHQSELGGGALEEARLRYKSAVASLRSVLTAIPNHQKAKSFENGSTVGGSESLADQAETEKKLEERVTNLRKNGKVTCYSII
Length604
PositionHead
OrganismMacleaya cordata
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Papaveraceae> Papaveroideae> Macleaya.
Aromaticity0.05
Grand average of hydropathy-0.645
Instability index41.94
Isoelectric point9.44
Molecular weight64681.55
Publications
PubMed=28552780

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14105
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     154.86|      33|      35|     140|     174|       1
---------------------------------------------------------------------------
  140-  172 (62.60/34.60)	PTTS.GGPSVP........................EANGFTTSTSSNARVRKCTTHAG
  177-  210 (59.85/36.26)	PASScEGPSVP........................DANGFTNSTTSNVGVHKSGIPSG
  350-  403 (32.41/15.24)	..TA.SGLSVPgsgpnlkgerpvkrrrgvdggggtDYRGKMASVSSGRGT.RSGIASG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.36|      26|      37|      61|      86|       3
---------------------------------------------------------------------------
   61-   86 (47.40/36.85)	MGGEADWYGILGARPFDDDETVKKQY
  101-  126 (42.97/32.70)	IGADGAFKLISEAWNLLSDKTKRVAY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14105 with Med30 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AYDQKRFPKTSQQKVPTTSGGPSVPEANGFTTSTSSNARVRKCTT
2) EIPTRPSNGSNSSTTQQHQNSKHPTTNKKTRAPVRNTAAVPKIRPMVTRSHNPINRTSSQHDSAAGVGNATAAQAANVAQQQAYEIAKRTASGLSVPGSGPNLKGERPVKRRRGVDGGGGTDYRGKMASVSSGRGTRSGIASGCKQGGPETGRANQSSSHLKTLPRLFSS
3) PTAVPASSCEGPSVPDANGFTNSTTSNVGVHKSGIPSGPTTAQASSHPS
4) QKAKSFENGSTVGGSESLADQAETEKKLEERVTN
125
261
173
558
169
430
221
591










Molecular Recognition Features






MoRF SequenceStartStop




NANANA