<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14096

Description WW domain
SequenceMERLNDSGQCSFGSANIGHEAFSSQVMASPAWLSQDVQSPMPGATQQAQVLGPLPPVSGPSTTLASPTAVTPAPVAGSSTPKGSSGTPSDAKQESPQAKFVPAPGYVVPAPSFSYNVVSKANTTSGSSQQSSAAPVIKSNVPASVAALQPPVPSQTTTTGPSFSYNIMTHNTTAPSGSLQFQPSTNTSVAASQEARTTTSASPGSQTVPLPVHPSSSSTTATPNLYPSPMWMPTASSFHGHPAMPGTPGTPGPPGIPPSPSPSSITIRSVAMDSSSSAHLRPVMPSTAPIPSNPAVQQQLYSPYTSLPAMAPPPQALWLQPPPLGGLQRPPFLPYPAVLPGPFPLPVRGMNFSSATFPDSQPLGVTPLGPPGGISLSSVGPGQSMSSLGMQPELPPPGIDQNMQANGDGGTVNTDEVDAWTAHKTDTGAVYYYNAVTGESTYEKPSGFKGEPGKVTVQPTPVSWEKLAGTDWSLVTTDDGKKYYYNNKTKVSSWQIPNEVTELRKKQDVDTLKTNLLSTQNANAPEKGSGPINLSAPAVNTGGRDATSLRPCAPASSSALDLIKKKLQDSGFPAPASPLQASSGPTTSDINGSRAVDATVKGNLGENSKDKQKDANGDENMSDSSSDSEDVDSGPSKEECITQFKEMLKERGILPFSKWEKELPKIVFDPRFKAVPGYSTRRSLFEHYVRTRAEEERKEKRAAQKAAIEGFKQLLEEASEDIDHKADYQSFKKKWGNDPRFEALDRKERELLLNERVLPLKKAAEEKIRSVREAAASSFKSMLREKGDIDTSTRWSRVKDSLRNDPRYRSVKHEDREILFNDYISELKSAEEEAERTSKAKREEQDKLKERERETRKRKEREEQEMERVRLKVRRKEAVSSYQALLVETIRDPQASWTESRPKLEKDPQGRAINPDLDKADTEKLFREHVKILYERCAREFQALLAEVLTAEASEQVTEDGKTVLTSWSAAKRLLKSDPRYSKMPRKERESLWRRYAEDMERKQKVGSDSKEDKLNTDTKSRSSLDSRRSPGGSRRIHGRS
Length1041
PositionUnknown
OrganismMacleaya cordata
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Papaveraceae> Papaveroideae> Macleaya.
Aromaticity0.06
Grand average of hydropathy-0.775
Instability index61.01
Isoelectric point8.79
Molecular weight113227.09
Publications
PubMed=28552780

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14096
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     375.02|      46|      47|     102|     147|       1
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   53-   98 (45.91/14.52)	PlppvsgpsttlaS..........................PT.A.VTPAP.......VAGSSTP..KGSSG....TPSD..A...KQ.....ESP...QA
  102-  147 (81.46/31.16)	P............A..........................PG.Y.VVPAPS.FSYNVVSKANTT..SGSSQ....QSSA..APVIKS.....NVPASVAA
  151-  191 (48.72/15.83)	P............V..........................PS.QtTTTGPS.FSYNIMTH.NTTapSGSLQ...fQPST...............NTSVAA
  201-  250 (49.02/15.97)	A............S..........................PGsQ.TVPLPV.HP....SSSSTT..ATPNL....YPSPmwMPTASSfhghpAMPGTPGT
  251-  299 (60.83/21.50)	P............G..........................PP.G.IPPSPSpSSITIRSVAMDS..SSSAHlrpvMPST..AP.IPS.....N.PAVQQQ
  308-  367 (38.51/11.05)	P............AmapppqalwlqppplgglqrppflpyPA...VLPGP..FPLPV.........RGMNF....SSAT..FP...D.....SQPLGVTP
  370-  405 (50.58/16.71)	P.......................................PG.G.I....S.LS.SVGPGQSMS..SLGMQ....PELP..PPGIDQ.....NMQA....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     223.02|      33|      39|     765|     797|       2
---------------------------------------------------------------------------
  628-  661 (41.21/25.70)	SE........D.VDSgpSK.EECI..TQFKEMLKE.RGILPFS........KWEK
  669-  694 (18.62/ 7.14)	DP........R.FKA..VP.GYSTrrSLFEHYVRT.RAE................
  696-  737 (28.94/15.62)	ER........KeKRA..AQ.KAAI..EGFKQLLEEaSEDIDHKAdyqsfkkKWGN
  765-  797 (53.98/36.20)	EE........K.IRS..VR.EAAA..SSFKSMLRE.KGDIDTST.......RWSR
  805-  839 (32.47/18.52)	DP........R.YRS..VKhEDRE..ILFNDYISElKSAEEEAE.......RTSK
  845-  861 (22.08/ 9.98)	QD........K.L................KE..RE.R...ETRK.......RKER
  862-  897 (25.72/12.97)	EEqemervrlK.VR....R.KEAV..SSYQALLVE.TIR.DPQA.......SW..
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.05|      26|      49|     420|     445|       3
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  420-  445 (50.12/33.99)	WTAHKTDTGAVYYYNAVTGESTYEKP
  472-  497 (50.93/34.66)	WSLVTTDDGKKYYYNNKTKVSSWQIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.43|      15|      15|     523|     537|       4
---------------------------------------------------------------------------
  523-  537 (26.16/12.47)	NAPEKGSGPINLSAP
  540-  554 (27.27/13.31)	NTGGRDATSLRPCAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.47|      14|      15|     597|     610|       5
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  597-  610 (23.74/15.96)	DATVKGNLGENSKD
  614-  627 (24.73/16.96)	DANGDENMSDSSSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.80|      14|     197|     741|     758|       6
---------------------------------------------------------------------------
  741-  755 (18.76/11.01)	FEALDRkERELLLNE
  934-  947 (23.04/14.59)	YERCAR.EFQALLAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.67|      16|     123|     898|     913|      10
---------------------------------------------------------------------------
  898-  913 (29.61/15.67)	TESRPKLE..KDPQG.RAI
 1019- 1037 (20.06/ 8.16)	TKSRSSLDsrRSPGGsRRI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14096 with Med35 domain of Kingdom Viridiplantae
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