<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14094

Description Helicase
SequenceMTTGKFSRQDAHEGFSCQNKFLSSNFLFSLPTQKLGSEGTPGARSMACAIVNPQRLQNPHIKKAWQTLSSLQVTCRNYLKPGITSPVVQSTGADNLPSRNLDSSQDTRKETTVWSSSDMSRKSSDNSRHEELRRHQNSIDSNPRVCESVNHSSNSLPERRMYAAEADRGANLGLSNGREESMLYNSPAPVGNGSFNNCTMGTNQKNGFGGNFADDLDDDDILKNLDVDQIVLEHFQSTCTPQSSMPRLSPFTPVINKDSCTSPDEACLLPELSAKCNHGFKVALCPEAATHLQEKKDMLIAISNELLDNVNDLSPLQIEKLRQDRLQLNKQIQQLEKYLHSSSVNEERQKSHFLASTTASRGFQSEAPPVGTFKIDPLRFDAQVHIHTEPNSYNNGVPSSVSFSSVDRFVTPGPVEREAYSPKLVDVNYTEGSHDKRWSSGDFPWTKKLEANNRKVFGNHSFRPNQREVINATMSGFDVFVLMPTGGGKSLTYQLPALICQGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQEIFRELNSGCCKYKLLYVTPEKVAKSDVLLRQLESLNARQALSRIVVDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLWYSIIPKTKKCLEDIDKFIKENHFDECGIIYCLSRLDCEKVAEKLQECGHKASFYHGSMDPQQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGVIEQSPFASGSRRTSLANPERILETNIENLLRIVSYCENDVDCRRLLQLVHFGEKFDPANCGKTCDNCSKTLGHIDKDVTDVANQLVELVKSTGQQHSSSHILEVFRGSMSQIVKRYRHDNLRLHGAGKHLGKGEASRILRHLVIEDFLVEEVKKSDIYGSVSSVLKVNESKVYNLYFGGQKVILRFPASSKTAKPVSVKGPLTSGKMSSPQYGSPGQPQNEVDLTISGKLYSALRKLRTVLLKEAGEGVNAYHIFGNATLHHISKRIPQTKEELLEVNGIGKAKITKYGDRVLETIETTIKEFYNTDKNSSGGSDSTEATKRRRNLTGTSNSDFKEDDDFTDSTGSLKKRATEEGLRRSAEDSSASKYEQCIDIDLDWEDPNNDIGNNGSYSKGEQNSGGRVLPSWSKPGNTPYSQGRNLFQEFSFKG
Length1229
PositionUnknown
OrganismMacleaya cordata
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Papaveraceae> Papaveroideae> Macleaya.
Aromaticity0.07
Grand average of hydropathy-0.557
Instability index53.59
Isoelectric point7.84
Molecular weight137118.66
Publications
PubMed=28552780

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro
transferase activity	GO:0016740	IEA:UniProtKB-KW

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14094
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     584.27|     172|     188|     711|     895|       1
---------------------------------------------------------------------------
   53-  159 (96.28/54.69)	......PQrlQNPHIKKAWQTlSSLQVTCRNY.LKPGITSPVVQSTGADNLPSRNLDSS.QDTRKettvwSSSDMSRKS.................SDNSRHeelrRH...QNSIDSNPRVCESvNH........SS..NSLPER..............................................................................
  711-  895 (267.46/213.94)	YHGSMDPQ..QRAFVQKQWSK.DEINIICATVaFGMGINKPDVRFVIHHSLPKSIEGYH.QECGR.....AGRDGQRSScV..........LYYSySDYIRV....KHmiSQGVIEQSPFASGS.RR........TS..LANPERILETNIENLLRI....VSYcendvDCRRLLQLVHFGEKFDPANCGKTCDNcsKTLGHIDKDVTDVANQLVElVKSTGQ
  906- 1083 (220.54/140.93)	FRGSMS.Q......IVKRYRH.DNLRLHGA....GKHLGKGEASRILRHLV...IEDFLvEEVKK.....SDIYGSVSS.VlkvneskvynLYFG...............GQKVILRFPASSKT.AKpvsvkgplTSgkMSSPQYGSPGQPQNEVDLtisgKLY.....SALRKLRTVLLKEAGEGVNAYHIFGN..ATLHHISKRIPQTKEELLE.VNGIGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     155.11|      47|     191|     456|     503|       2
---------------------------------------------------------------------------
  456-  503 (81.08/58.99)	VFgNHSF.RPN.QREVINAT...MSGFDVFVLMPTGGGKSLTYQLPALICQGI
  646-  697 (74.03/48.59)	VF.RQSFnRPNlWYSIIPKTkkcLEDIDKFIKENHFDECGIIYCLSRLDCEKV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.13|      24|      25|    1106|    1129|       3
---------------------------------------------------------------------------
 1106- 1129 (41.28/24.97)	NTD.KNSSGGSDSTEATKRRRNLTG
 1132- 1156 (36.85/21.49)	NSDfKEDDDFTDSTGSLKKRATEEG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14094 with Med34 domain of Kingdom Viridiplantae
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