<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14090

Description Uncharacterized protein
SequenceMASMSPNSASTKKQNVVGIVENLEKHVMDTAPEQLLELKKIAVKFEEKIFYAATSREDYLRRISVKMISMENKPQSTGDNASNQLAANSSCSNQNPPDSGNNRKDNVPFVMDLMVGSTPGPKPLPSQGAQSQVGNRGKSLSIPVANPSQASQQKPLSHTIHNSMASAGVQSSGNLVSALPSITGLTDNTVPTGVGQSCNLQNLSGVSQNLIGNSVGQCGPSNTFANSQRQMQGRQHMQQVVAQQYQQQSQNPHQYIYQNQFQHPALKKRRGNIPPQLMQSHIQQQQQQQQNLLQPIHLQSSQQSGVQTSSCLLSNQNTLQQAQSSMIQSAAQSGLLQNQQSSSLMPSVLQQHSQSVICQQNDMSSFHQQQLGPQSNISGLKQQQLLGTQTGVSNMQTHQQSMHILQQAKVAAQQTSSVLLSTQGHQPQSSRQQLMSQRQPQSAHFQQQMGLEKQPNSLQRGLIQPQNIIDQQKQLLSQRVHPDPSSTSVDSIPPRGHMSAGDEQEEIYQKVKSMKEKYLPELHEMYKRLSIKCQQVIVCFFSHSPEDIDIYRRNKKHVERMINFLNLSKNSIPQGFKEKLVPTEKHILTFIQSFKRPISSHQQFQLPGDNLSQSQITQLKHNDNQLNPQMQPRNLQSSEPTMNQNASTSIQHGSMPSLSSHMGIPPVLPSMINTLQHGSVLELGQGNALSTLQQGAVGGSIQKSTSNASQQANVNTLSQNIMNALPSNMIHHQHLKQHQEQHLTPTQQMKQHFQRQLMQQQHEQQILKQKHQQLPLLQQQHLQRQQKLPQSAQSLAQQMPQVHHQMSEVSESKVRSSMGVNVISGTFQQHFSAGQHSAYNNHQQLKTGASFHISSPQLLQAASSQISQHSSPQIDQQSMLTSLSKAGTPLQSANSPSISLSPSTPLASSPLPGKPEKQNSGLSSLSNAGNIGQTQTAISSLPQQAQSLAIATPGISASPLLEEFISPDSNLGTASTIVSEKSIATMTPTERLLQAVKSVSRKALSASVNDIGFAISMGDGIAGPRQPGYGPLAAVGEDLVATTKCRLEARNFIPVNGIAVKRASRCYSNENPLNVLPSDENVHDSFETSELESTATSRIKRCRLEINHALLEEISEINKRLINTVVNISDEDVNSMAALGEGVEGTIVKCSFSPRTQDISAQMVSSVNFFATVKLCNLIFGVLNTCSFMVVQSPVLSIRLLISTNYPNCSPILLDKLPVKLSNEYGNLLMKATSKFSTSLRCLSQPMSLGEMARNWDACAFAVVVEYAQQNGGGTFSSRYGTWENCVRAA
Length1290
PositionTail
OrganismMacleaya cordata
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Papaveraceae> Papaveroideae> Macleaya.
Aromaticity0.04
Grand average of hydropathy-0.536
Instability index64.40
Isoelectric point9.18
Molecular weight141273.56
Publications
PubMed=28552780

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14090
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      68.05|      15|      15|     882|     896|       1
---------------------------------------------------------------------------
  844-  856 (19.11/ 6.22)	QL.KTGASFH.ISSP
  882-  896 (27.13/12.58)	SLSKAGTPLQSANSP
  899-  912 (21.81/ 8.37)	SLS.PSTPLASSPLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.88|      20|      22|     298|     317|       2
---------------------------------------------------------------------------
  278-  297 (29.72/ 8.47)	MQSHIQQQQQQQQNLLQPIH
  298-  317 (33.16/10.43)	LQSSQQSGVQTSSCLLSNQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.77|      21|      22|     182|     202|       3
---------------------------------------------------------------------------
  189-  209 (36.21/14.26)	TVPTGVGQS....CNLQNLSGVSQN
  696-  720 (26.55/ 8.41)	AVGGSIQKStsnaSQQANVNTLSQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.44|      22|      22|     754|     775|       4
---------------------------------------------------------------------------
  247-  271 (27.80/ 8.36)	QQsqnPHQYIYQNQFQHPALKKRR.......G
  344-  369 (24.29/ 6.24)	LM...PS..VLQ.QHSQSVICQQNdmssfhqQ
  754-  772 (27.35/ 8.08)	......QRQLMQQQHEQQILKQKH.......Q
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.82|      20|      22|     635|     654|       5
---------------------------------------------------------------------------
  642-  670 (21.92/ 6.01)	MNQNASTSIQHGSmpsLSSHMgippvlPS
  722-  746 (28.90/10.63)	MNALPSNMIHHQH...LKQHQ.eqhltPT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.49|      22|      23|     544|     566|       6
---------------------------------------------------------------------------
  520-  542 (31.67/15.43)	PELHEMYKRLSIKCQQVIvCFFS
  545-  566 (37.81/25.87)	PEDIDIYRRNKKHVERMI.NFLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     203.58|      45|      55|     404|     448|       9
---------------------------------------------------------------------------
  320-  343 (28.71/ 7.35)	.....QQAQSS....MI........QSAAQSG..................LL.QN.....QQSSS..
  371-  419 (50.65/19.29)	LGPQSNISGLKQQQLLGtqtgvsnmQTHQQSMHI..................lQQAKVAAQQTSSVL
  420-  475 (69.37/29.46)	LSTQGHQPQSSRQQLMS........QRQPQSAHFQQQmglekqpnslqrgLI.QPQNIIDQQKQ..L
  776-  809 (54.85/21.57)	LLQQQH...LQRQQKLP........QS.AQS..LAQQ.............M...PQ..VHHQMSEV.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.34|      19|      56|      78|      96|      10
---------------------------------------------------------------------------
   69-   91 (21.81/ 6.63)	SMENkPqstGDNASNQLAAN.....SSC
  617-  640 (24.53/ 8.38)	TQLK.H...NDNQLNPQMQPrnlqsSEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      53.86|      12|     111|     859|     870|      11
---------------------------------------------------------------------------
  859-  870 (20.21/ 9.44)	LQAASSQISQHS
  971-  982 (17.42/ 7.19)	LGTASTIVSEKS
  993- 1003 (16.24/ 6.23)	LQAVKS.VSRKA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.32|      15|     147|     676|     693|      12
---------------------------------------------------------------------------
  676-  693 (22.44/16.96)	QHGSVlelGQGNALSTLQ
  829-  843 (29.88/15.16)	QHFSA...GQHSAYNNHQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.96|      16|      20|    1189|    1208|      14
---------------------------------------------------------------------------
 1189- 1208 (18.00/24.27)	MVVQSpvLSIRLliSTNYPN
 1212- 1227 (26.96/16.95)	ILLDK..LPVKL..SNEYGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.99|      12|      20|     121|     132|      15
---------------------------------------------------------------------------
  121-  132 (22.72/12.50)	PKPLPSQGAQSQ
  143-  154 (20.27/10.03)	PVANPSQASQQK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14090 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DNLSQSQITQLKHNDNQLNPQMQPRNLQSSEPTMNQNASTSIQHGSMPSLSSHMGIPPVLPSM
2) IYQNQFQHPALKKRRGNIPPQLMQSHIQQQQ
3) PQLLQAASSQISQHSSPQIDQQSMLTSLSKAGTPLQSANSPSISLSPSTPLASSPLPGKPEKQNSGLSSLSNAG
4) QQKQLLSQRVHPDPSSTSVDSIPPRGHMSAGDEQEEI
5) RISVKMISMENKPQSTGDNASNQLAANSSCSNQNPPDSGNNRKDNVPFVMDLMVGSTPGPKPLPSQGAQSQVGNRGKSLSIPVANPSQASQQKPLSHTIHNSMASAGVQSSG
6) TLQQGAVGGSIQKSTSNASQQANVNTLSQNIMNALPSNMIHHQHLKQHQEQHLTPTQQMKQHFQRQLMQQQHEQQILKQKHQQLPLLQQQHLQRQQKLPQSAQSLAQQMPQVHHQMSEVSESKVR
7) TSSVLLSTQGHQPQSSRQQLMSQRQPQSAHFQQQMGLEKQPNSLQRGLIQ
8) VGQCGPSNTFANSQRQMQGRQHMQQVVAQQY
609
256
856
471
62
691
415
215
671
286
929
507
173
815
464
245










Molecular Recognition Features






MoRF SequenceStartStop




NANANA