<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14082

Description Transcription elongation factor
SequenceMATKSGDMDYWRKYFRSANTDIFDVIENAIVVAASDCPKEFRNRRDRIAEKLFSCRLSRCVGCDRVELKVPEEEGDEDDDGLKTTFNGGDGDFEGGKESKVNSSTDDHVELNMTRVSNYSYDEAEALTEEIEEVTQIVGEVLRIKEILSDSQDQSDGVLFESLRRLQLMELSVETLKATEIGKAVNGLRKHASKQIRHLARTLIDGWKILVDEWVCTTAAFKDSEGSPDSVKPSEVDEEEEGLPSPPLDEGAFLAPPTSIELSQFFDGMDDFGNPRNSGEFNKNHERGRKPVSENCTVPTRKPQPPQKANVTNENKSHQMKKQEAMIEQTKTPNTNSEPARFPKQSSELKANNGMKLQQKADAFGNQKRPPSGQQDKPKSSEEVSVRMKLEAAKRKLHEGYQQAENAKKQRTIQVMELHDLPKQGLGHRNPHLRPGAGGHNRNWSNGRR
Length449
PositionUnknown
OrganismMacleaya cordata
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Papaveraceae> Papaveroideae> Macleaya.
Aromaticity0.05
Grand average of hydropathy-0.981
Instability index54.82
Isoelectric point5.67
Molecular weight50481.58
Publications
PubMed=28552780

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
translation elongation factor activity	GO:0003746	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14082
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.55|      23|     158|      70|      93|       1
---------------------------------------------------------------------------
   70-   93 (37.40/28.16)	VPEEEGDEDDDGLKTTfNGGDGDF
  231-  253 (41.14/25.70)	VKPSEVDEEEEGLPSP.PLDEGAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     218.70|      64|      91|     256|     319|       2
---------------------------------------------------------------------------
  256-  302 (75.70/35.54)	........................................PPTSIELSQFFDGM......DDFGNPRN..SGEFNKNHERGRKPVSENCTVPTRK
  303-  396 (79.75/37.77)	PQPPQKANVTNENKSHQmkkqeamieqtktpntnseparfPKQSSEL.KANNGMklqqkaDAFGNQKRppSGQQDKPKSSEEVSVRMKLEAAKRK
  398-  449 (63.26/28.66)	HEGYQQAENAKKQRTIQ................vmelhdlP......KQGLGHR......NPHLRP.G..AGGHNRNWSNGRR............
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14082 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KDSEGSPDSVKPSEVDEEEEGLPSPPLDEGAFLAPP
2) KVPEEEGDEDDDGLKTTFNGGDGDFEGGKESKVNSSTDD
3) QFFDGMDDFGNPRNSGEFNKNHERGRKPVSENCTVPTRKPQPPQKANVTNENKSHQMKKQEAMIEQTKTPNTNSEPARFPKQSSELKANNGMKLQQKADAFGNQKRPPSGQQDKPKSSEEVSVRMKLEAAKRKLHEGYQQAENAKKQRTIQVMELHDLPKQGLGHRNPHLRPGAGGHNRNWSNGRR
222
69
264
257
107
449










Molecular Recognition Features






MoRF SequenceStartStop




1) KSSEEVSVRMKLEAAKRKLHEGYQQA
2) MKKQEA
3) MKLQQKADAF
4) RTIQVMELHDLPKQGLGHRNPHLR
5) YWRKYFR
379
320
355
411
10
404
325
364
434
16