<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14082

Description Transcription elongation factor
SequenceMATKSGDMDYWRKYFRSANTDIFDVIENAIVVAASDCPKEFRNRRDRIAEKLFSCRLSRCVGCDRVELKVPEEEGDEDDDGLKTTFNGGDGDFEGGKESKVNSSTDDHVELNMTRVSNYSYDEAEALTEEIEEVTQIVGEVLRIKEILSDSQDQSDGVLFESLRRLQLMELSVETLKATEIGKAVNGLRKHASKQIRHLARTLIDGWKILVDEWVCTTAAFKDSEGSPDSVKPSEVDEEEEGLPSPPLDEGAFLAPPTSIELSQFFDGMDDFGNPRNSGEFNKNHERGRKPVSENCTVPTRKPQPPQKANVTNENKSHQMKKQEAMIEQTKTPNTNSEPARFPKQSSELKANNGMKLQQKADAFGNQKRPPSGQQDKPKSSEEVSVRMKLEAAKRKLHEGYQQAENAKKQRTIQVMELHDLPKQGLGHRNPHLRPGAGGHNRNWSNGRR
Length449
PositionUnknown
OrganismMacleaya cordata
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Papaveraceae> Papaveroideae> Macleaya.
Aromaticity0.05
Grand average of hydropathy-0.981
Instability index54.82
Isoelectric point5.67
Molecular weight50481.58
Publications
PubMed=28552780

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
translation elongation factor activity	GO:0003746	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14082
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.55|      23|     158|      70|      93|       1
---------------------------------------------------------------------------
   70-   93 (37.40/28.16)	VPEEEGDEDDDGLKTTfNGGDGDF
  231-  253 (41.14/25.70)	VKPSEVDEEEEGLPSP.PLDEGAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     218.70|      64|      91|     256|     319|       2
---------------------------------------------------------------------------
  256-  302 (75.70/35.54)	........................................PPTSIELSQFFDGM......DDFGNPRN..SGEFNKNHERGRKPVSENCTVPTRK
  303-  396 (79.75/37.77)	PQPPQKANVTNENKSHQmkkqeamieqtktpntnseparfPKQSSEL.KANNGMklqqkaDAFGNQKRppSGQQDKPKSSEEVSVRMKLEAAKRK
  398-  449 (63.26/28.66)	HEGYQQAENAKKQRTIQ................vmelhdlP......KQGLGHR......NPHLRP.G..AGGHNRNWSNGRR............
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14082 with Med26 domain of Kingdom Viridiplantae
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