<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14081

Description Mediator complex
SequenceMLKGKRGEHRLFRLAENLCMNLILSLRDVFLVKKDLKGPTEFTETLNRMTIISLAITIKTRGIAEVEHMVFLQPLLEQVMATSQHTWSEKTLRYFPPLIRDALMGRMDKRGHAIQAWQQAETTVINQCTQLLSPSADPTYVMTYINHSFPQHRQYLCAGAWMLMHGHPESINSANLGRVLREFSPEEVTSNIYTMVDVLLHHIHKEMQHGHLLQDLLVKASANLAFLIWTHELLPLDILLLALIDRDDDPHALRIVISLLDRQELQQRIKLFCMNRGLPEHWLHSGLFKRVELQKALGNHLSWKDRYPPFFDDIAARLLPVIPLIVYRLIENDATDIADKVLAVYSAFLAYHPLRFTFVRDILAYFYGHLPSKLIVRILNVLDLSKIPFSESFPRHIATPNPATCPPPDYFATLLLGLVNNVIPPLNSKSKSGSMGDTANSSLRAAHNKMPASSQPGPTNASEGQKPFYQIQDPGTYTQLVLETAAIEILSLPVSAAQIVSALVNIVVHVQPTLIQSSNGLQGTPSGVSQGSVLPTSPSGGSTDSMSTSRSTPSTSGINATNFVSESGYTCQQLSCLLIQACGLLLAQLPPDFHIPLYQEASRIIKECWWLNDGKKSLKELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHAFFSNLPQEWLEGSHAVIKHLRPVTSVAMLRIAFRIMGPLLPRLAFARPLFMKSLALLFNVMADVFGRNSQPSTPTEASEIADLIDFLHHAVLYEGQGGPVQSNSKPKLEILTLCGKVMELLRPDVQHLLSHLRTDPNSSIYAATHPKLVQNPPQQ
Length808
PositionTail
OrganismMacleaya cordata
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Papaveraceae> Papaveroideae> Macleaya.
Aromaticity0.07
Grand average of hydropathy-0.002
Instability index44.37
Isoelectric point7.21
Molecular weight89930.05
Publications
PubMed=28552780

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14081
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.76|      12|      15|     236|     248|       1
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  236-  248 (15.25/13.24)	LDIlLLALIDRDD
  253-  264 (19.51/11.63)	LRI.VISLLDRQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      77.32|      24|     326|     268|     318|       2
---------------------------------------------------------------------------
  278-  301 (45.03/38.69)	LPEHWLHSGLFKRVELQKALGNHL
  610-  629 (29.69/ 7.93)	....WLNDGKKSLKELDSAVGYAL
  658-  663 ( 2.61/ 9.34)	LPQEWL..................
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14081 with Med23 domain of Kingdom Viridiplantae
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