<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14079

Description Mediator complex
SequenceMAEKQLIIAIEGTAAMGPYWNAIFTDYLEKIISSNVISFELQKLSASSIELSLVVFNAHGPFSGCLVQRSGWTRDVDIFLQWLSGIPFSGGGFSDAAIGEGLSEALMMFPLVPNGSQNVDGHKHCILVAASNPYPLPTPVFLPQISNLDQSENSEVQTESRLSDAETVAKTFSQCSVSLSVISPKQLPKLRGIYNAGKRNPRAADPSVDNVKNPYFLVLLSENFMEARAALSRPGLTSMASNQSPLKMDAASVPSVSGPPPTSIPSVNGSMMNRQSIPVGNIPTATVKVEPNTGPSVVSGSAFPHLPAVSHGASQGVANLQTSPPSSTSQEMLTNSDNVQEFKPMVSGLPQPLRPTGPAAANVSILNNLSQARQVMSSASLTGASSMGLQTMGGTPMAMHMSNMISSGMASTALPAAQNVFSSGQSGITSVAGSGSLVGPTQIPQNTALGGFASATSNISGNSNHGMSQPLASLQGAVSMGQSVPGMNQGNLSGGQTGIGMNQNMMNGLGPSGVASGAGTMIPTPGMSQQVQAGIQTLGVANSSTSNMPMPQQTSGAMQSAPDKYVRVWEGALSGQRQGQPVFITKLEV
Length589
PositionUnknown
OrganismMacleaya cordata
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Papaveraceae> Papaveroideae> Macleaya.
Aromaticity0.05
Grand average of hydropathy-0.061
Instability index47.25
Isoelectric point6.18
Molecular weight60809.19
Publications
PubMed=28552780

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14079
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.43|      19|      24|     480|     503|       1
---------------------------------------------------------------------------
  460-  478 (29.48/ 7.25)	SGNSNHGMSQ.PLASLQGAV
  480-  499 (32.95/22.56)	MGQSVPGMNQgNLSGGQTGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.82|      21|      24|     500|     523|       2
---------------------------------------------------------------------------
  378-  398 (26.99/ 7.36)	SASLTGASSMGLQTMGGT.....PMA
  503-  528 (31.83/13.74)	QNMMNGLGPSGVASGAGTmiptpGMS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.92|      22|      24|     232|     254|       3
---------------------------------------------------------------------------
  232-  254 (35.25/17.63)	SRPGLTSMASNQSPLkMDAASVP
  257-  278 (42.68/18.48)	SGPPPTSIPSVNGSM.MNRQSIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.58|      30|     105|     425|     455|       4
---------------------------------------------------------------------------
  425-  455 (47.44/24.81)	QSGITSVAGSGSLVGPTQIPQNTAlGGFASA
  532-  561 (53.14/24.68)	QAGIQTLGVANSSTSNMPMPQQTS.GAMQSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.09|      31|     161|     133|     210|       6
---------------------------------------------------------------------------
  180-  210 (54.25/98.95)	SVISPKQLPKLRGIYNA...GKRNPRAADPSVDN
  296-  329 (48.84/11.16)	SVVSGSAFPHLPAVSHGasqGVANLQTSPPSSTS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14079 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AVSHGASQGVANLQTSPPSSTSQEMLTNSDNVQEFKPMVSGLPQPLRPTGPAAANVSIL
2) LSRPGLTSMASNQSPLKMDAASVPSVSGPPPTSIPSVNGSMMNRQSIPVGNIPTATVKVEPNTGPSVVSGSAFPH
3) MSSASLTGASSMGLQTMGGTPMAMHMSNMIS
4) QIPQNTALGGFASATSNISGNSNHGMSQPLASLQGAVSM
5) QSVPGMNQGNLSGGQTGIGMNQNMMNGLGPSGVASGAGTMIPTPGMSQQVQAGIQTLGVANSSTSNMPMPQQTSGAMQSAPDKYVRVWEGA
308
231
376
442
482
366
305
406
480
572










Molecular Recognition Features






MoRF SequenceStartStop




1) DKYVRVWE
2) LRGIY
563
190
570
194