<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14068

Description Uncharacterized protein
SequenceMEEDTVNPATVFRIRLKQPRSNLLHKMSVPELCRNFSAVTWCGKLNAIACASETCARIPSSNANPPFWIPIHIVNPERPTECAMFNVIADSPRDSVQFIEWSPVSCPRALLIANFHGRITIWTQPSKGPANLVRDSSCWQCEHEWRQDIAVVTKWLSGISPYRWLSSNSGSPAIPKSSFEEKFLSQRPQTSARWPNFLCVCSVFSSGSVQLHWSQWPLAQNGVASKWFSTSKGLLGAGPSGIMAADAIITEAGTMHVAGVPIVNPSTVVVWEVTPGPGNGFQATAKTSTTSAVPPSLNPPRWTGFAPLAAYLFSWQEYLASEGKQGKKQMGQESNETVSLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAIAFDPTHGGSVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSLQPVVLHPIFGNPASSFGGQPPMQTVWVTKVNKSIPPMNELKCSQMIAAGATLSDDRGASESWMEKTNMLNFDPFDLPSDVRTLARIVYSAHGGEVAVAFLHGEVHIFSGASFSPVDKYHVNVVSAIAAPTFSSTSCCLASVCHDTSKDHTILKIIRVLPPAIPSSQVKVNSATWERAIADSRFWWSLLVGVDWWDAIGCTQSAAEDGIVSLNSVIAVLDADFHSLPSSQHRQQHGPSLDRIKCRLLEGTNAQEVRALVLDMQARLLLDMLGKGIESALINPATLVPEPWQASGETLSGIDPDAMTVDPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVGATAGTGSNRNMVTSPTHSSASPSTTQGGQSGTTSSTGSSQMQAWVQGAIAKISSTADGASNSTPNPMSGPSPFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFWRRQLPRYIGGAQRSADSNMQKPQSIPPGKVEEMNTASTKPASGAGQLPGSKGAEEGPASRSPRLGSGNAGHGYTFEEVKVLLLILMDFCGLRAGLAHPLPVSQVGVSNIQICLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGSWSDTDDLAPVDEAPKLKNSSDIFEINSSDDYDTYSGTQSLWPRKRRLSERDAAFGLKTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCVRCLRQTSAFASAGATSPLNQSDREAWWISRWSYGCPMCGGTWVRVV
Length1187
PositionTail
OrganismMacleaya cordata
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Papaveraceae> Papaveroideae> Macleaya.
Aromaticity0.08
Grand average of hydropathy-0.130
Instability index44.20
Isoelectric point6.57
Molecular weight128172.79
Publications
PubMed=28552780

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14068
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     220.29|      50|     114|     340|     389|       1
---------------------------------------------------------------------------
  340-  389 (82.27/43.06)	LHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAIAFDPTHGGS.VITVV.IV
  457-  504 (65.08/32.58)	LKCSQMIAAGATLSDD....RGASESWMEKTNMLNFDPFDLPSdVRTLArIV
  527-  574 (72.94/37.38)	ASFSPVDKYHVNVVSAIAAPTFSSTS..CCLASVCHDTSKDHT.ILKII.RV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.90|      13|     116|     744|     756|       2
---------------------------------------------------------------------------
  744-  756 (26.05/17.31)	HFITRLRRYASFC
  861-  873 (26.85/18.06)	HFLHRLCQLLLFC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.17|      31|     116|     155|     198|       3
---------------------------------------------------------------------------
  155-  194 (45.57/48.72)	WLSGISPYrWLSSNSGSPAipkSSFeekflSQRPQTSARW
  413-  443 (62.60/29.65)	WESSLQPV.VLHPIFGNPA...SSF.....GGQPPMQTVW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.65|      15|      17|     778|     792|       4
---------------------------------------------------------------------------
  778-  792 (27.99/13.94)	TSPTHSSASPSTTQG
  798-  812 (28.66/14.45)	TSSTGSSQMQAWVQG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     116.57|      30|     528|     579|     629|       5
---------------------------------------------------------------------------
  579-  616 (50.69/36.63)	IPSSQVKVNSATWERAiadsrfWWslLVGVDWWDAIGC
 1117- 1143 (51.27/20.27)	IMGSRRDVVTAVWKTG..........LEGV.WYKCVRC
 1167- 1176 (14.62/16.23)	......................WW.....ISRW.SYGC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     116.70|      26|     528|     283|     308|       6
---------------------------------------------------------------------------
   47-   68 (23.93/ 7.81)	AIACASETCArIPSSnANPPFW......
  283-  308 (48.75/24.08)	ATAKTSTTSA.VPPS.LNPPRWTGFAPL
  813-  838 (44.02/20.98)	AIAKISSTAD.GASN.STPNPMSGPSPF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.06|      16|      17|     885|     901|       8
---------------------------------------------------------------------------
  886-  901 (27.74/18.23)	GGAQRSADSNMQKPQS
  904-  919 (26.31/11.52)	PGKVEEMNTASTKPAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.94|      10|      17|     696|     705|      12
---------------------------------------------------------------------------
  696-  705 (18.23/10.31)	INPATLVPEP
  716-  725 (18.72/10.80)	IDPDAMTVDP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14068 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GAQRSADSNMQKPQSIPPGKVEEMNTASTKPASGAGQLPGSKGAEEGPASRSPRLGSG
2) TAGTGSNRNMVTSPTHSSASPSTTQGGQSGTTSSTGSS
887
767
944
804










Molecular Recognition Features






MoRF SequenceStartStop




NANANA