<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14066

Description Uncharacterized protein
SequenceMLIIKSVDDALQLSHAYGVQIVELGHALVLFIFSVIVGLIDSTLDDWGLHPTFIQSGIFGGGDHQDMDVDSKVSHGDKRNEHREQLRKANAFTAMEILGKLTENKKAMILLRLVHLNMPEKFNGLLQRLQFMEANKLVSSNLKSASQLLVRLSANIQRVLGFQNQVNKRQLIGALIDIGSCSSTSCSNFGAHRAACWVPFDIYMETAMDGKQLPATSAIDILTELTKTLQVINRASWQETFQALWIAALRLVQRERDPLEGPFPHLDPRLCVLLSITPLAIVRVVEDAGEMPLSSLQGGSGSGNTGAAFEQGIDGRGQASRRQGLISSLRILGQFSGLLSPPSSVVISANNAAAKAANFISNFKNGSDSFGGSIRGDTHGKAGGTMLHLIVEACIARKLIDTSAYFWPGYVSAPPITSLSDSSLGQGSPWSTFMEGAQLVGPLKNALIATPASSLVEIEKLYHIAINGSEEERTAAAKILCGASFSRGWNIQEHVVHFVVKLLSPPVPPNFTGPGNHYVEYMSMLHSVLFGMSSIDNVHILSLHGVIPEVAASLMPLCEAFGSLVPTSSLKSSTCDDISSYTVFSCAFLFLLRLWKFYRPPHEHCITARGGYTGSELTLEYLLILHNSRIAVQNSSAMDKPSKVSNPPETSSQAVYIDSFPKLRAWYCQNKACIASTLSGLSSGNPVHQVANKILNMIYWRITKGGAISSNPSTLSGSSISGSPASAGEDAYQRPVLPAWEVLEATPFVMEAIVTACAHGRLSSRDLTTGLRDLVDFLPASLAAIISYFSAEITRGIWKPVAMNGTDWPSPAANLLSIESEVKEIIAAAGVTVPSGSSGAGAPVMLPLPVAALVSLTITFKLEKSLEYIHGVAGPALENCAAGCTWNSMPIIGALWAQKVRRWHDFIVVSCSRSAFKQDQGAVAQLLRSCFTSFLGSPHVAASPIGVGGLLGWNISARGARPHMAPGFLYLRVCRMIQNNQFVNNVILGLVVDTARESATKWAHANSPRLKSSQASLASAAARAKEVATLGASLLCIAGGVPLVQLLYQETIPTWLLSSREGENRDVGPMSCILQGYSMAYMLILSGSFIWGVGATSSAGSFSRWATIVRVHTDFLAGALEGNISLGCDPATWKAYVSCFVGLVVNFAPAWIREVNQVTLKKLAKGLRGWHECELALALLERGGPEAMGSVAELALASD
Length1199
PositionTail
OrganismMacleaya cordata
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Papaveraceae> Papaveroideae> Macleaya.
Aromaticity0.08
Grand average of hydropathy0.174
Instability index44.45
Isoelectric point7.77
Molecular weight128578.48
Publications
PubMed=28552780

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14066
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     335.75|      88|     241|     375|     488|       1
---------------------------------------------------------------------------
  293-  414 (100.99/50.72)	LSSLQGGS.GSGNTGAAF.EQGIDG.RGQAsrRQGL.I....SSL.............rilgqfsgllsppssvvisannaaakaanfisnfkngsdsfggsiRGDTHGKAGGT.MLHLIVEACIARKL....IDTS....AYFWPGYVSAP
  416-  468 (56.64/52.86)	ITSLSDSSLGQGSPWSTF.MEGAQL.VGPL..KNAL.IATPASSLVEIeklyhIAING..............................................................................................
  713-  784 (67.37/30.09)	.STLSGSSI.SGSPASAG.EDAYQRpVLPA..WEVL.EATP.........................................................................fVMEAIVTACAHGRLssrdLTTGlrdlVDFLPASLAA.
  785-  875 (110.75/51.96)	IISYFSAEITRG.IWKPVaMNGTDW.PSPA..ANLLsI...ESEVKEI.....IAAAG..........................................vtvPSGSSGAGAPV.MLPLPVAALVSLTI.tfkLEKS....LEYIHG.VAGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     128.79|      33|      93|    1053|    1087|       2
---------------------------------------------------------------------------
  566-  593 (46.16/20.13)	PTSSLKSSTCD..DISSYTV......F.....SCAFLFLLR
  595-  625 (25.40/ 9.41)	..WKFYRPPHEH.......CITArgGYtgselTLEYLLIL.
 1053- 1086 (57.23/31.22)	PTWLLSSREGENrDVGPMSCILQ..GY.....SMAYMLILS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.99|      39|     249|     664|     711|       5
---------------------------------------------------------------------------
  664-  711 (59.96/57.57)	RAWYCQNKACIASTL.SGLSS..GNPvHQVANKilnmiywrITKGGAISSN
  913-  954 (62.03/37.10)	RSAFKQDQGAVAQLLrSCFTSflGSP.HVAASP........IGVGGLLGWN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.58|      32|     296|     330|     363|       9
---------------------------------------------------------------------------
  330-  363 (49.10/34.65)	RILGQFSGLLSPPSSVviSANNAAAKAANFISNF
  629-  660 (55.48/33.50)	RIAVQNSSAMDKPSKV..SNPPETSSQAVYIDSF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14066 with Med33 domain of Kingdom Viridiplantae
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