<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14031

Description Uncharacterized protein
SequenceMATPASAVSDVGGPQVEEPSQAKTASMAEPVAAAAGLAGASNPSTVAAAAPGDALSGPVSATTSDSAAAPPPASPATPAAPPPASPAPLAAPGPPRPQFAGSLSYMAPGAPSPSPAFSYNVLPRAPPAPQVGGGGASLQPSSSPALTVAPMPASALQPPAPGQYFGSRPSFSYNVVSHANARLPTGQQFQLDTGANLAGQISRFVPPGSLQPPTPGHITRPSTAFPGSMAPNPPGSIQLPFSVPRPSSIPCGASAQQGNSDINNLKSDGPSASEVTPHAMQLSTGMPSNSPSTIASASGNPSIPIQTLTNSSVPPRPEVFGAARPSVPGQPSAIVSNPTSLLGRPIVPSAAPLPQTTPPIATQGVTPQNSQPPFYSSYPSGPAIIPAQPLWPHPHPPQPTGFQQPPFQSYPAGPVGFLGRPIVGASAVTTAFANVQPPGVSTGGDWKIQASTNPGSEQPTHASAEPDSTGHGGQVNERLEENRNTGVQDSDAWSAHKTETGVVYYYNALTGESTYQKPTGFKGEPEKVATQPVPVSWDKLAGTDWSIVTTSDGKKYYYDSKQKVSSWQLPPEVCEILKNAESGSLKEGSTSVQDAATIENKGVISIDASTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGASSAPSALAASSAASELNGSRPADAALKGQQVANNGEKSKDNNGDVNMSDSSSDSDDEEHGPSKEDCIRQFKEMLKERGVAPFSKWERELPKIVFDPRFKAIPSHSTRRAIFDHYVRTRAEEERKEKRAALKAAVEAYKELLEEASEDINQKTDYQEFKRKWGADPRFEALDRKEREVLFNEKVKAVQEKVQSMRKAVNADFKSMLRESKDITSTCRWAKVKENFRSDPRYKAMKHEERETIFNEYIVELKSAEQEAEQAAKAKVDEQAKLKERERETRKRKEREEQEMERVKMKIRRKEAVSSYQALLVEMIKDPKASWTESKPKLEKDPQGRARNPDLGQGDAEKLFRDHVKDLYERRVRDFRALLSEVITPEVAARTTDEGKTAINSWSEAKGLLRSDLRYNKLASKDRESIWRRYADDLTRKLRQSDTKEKEKDKPDTDGKQLRSSDPPRRR
Length1102
PositionUnknown
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.06
Grand average of hydropathy-0.721
Instability index52.74
Isoelectric point8.63
Molecular weight118281.50
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14031
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     414.31|      60|      60|     769|     828|       1
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  714-  760 (55.93/30.19)	............I..RQ.FKEMLKE..RGVAPFSKWERELPKIVFDPRFKA....IpSHSTRRAIFDH
  769-  828 (96.00/57.17)	ERKEKRAALKAAV..EA.YKELLEEASEDINQKTDYQEFKRKWGADPRFEA....L.DRKEREVLFNE
  832-  891 (85.57/50.14)	AVQEKVQSMRKAV..NAdFKSMLRE.SKDITSTCRWAKVKENFRSDPRYKA....M.KHEERETIFNE
  900-  931 (40.78/19.99)	EQEAEQAA.KAKV..DE.QAKLKE............RE.........R.ET....R.KRKER.....E
  936-  997 (75.04/43.06)	ERVKMKIRRKEAV..SS.YQALLVEMIKD..PKASWTESKPKLEKDPQGRArnpdL.GQGDAEKLFRD
 1006- 1062 (60.98/33.59)	RVRDFRALLSEVItpEV.AARTTDEGKTAINSWSEAKGLLR...SDLRYNK....L.ASKDRESIW..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     224.04|      24|      35|     336|     359|       3
---------------------------------------------------------------------------
  100-  127 (27.29/ 9.74)	AGS...LSYM..A.P.GAPSPS...PafsynvL.PR.A..P.P
  133-  159 (22.46/ 6.22)	GGG...ASLQpsSSP.AL.TVA...P......M.PASAlqP.P
  226-  246 (23.34/ 6.87)	..P...GSMA..PNP...PGSI...Q......L.PFSV..PrP
  267-  288 (25.72/ 8.60)	SDG...PS....ASE.VTPHAM...Q......L.STGM..P.S
  292-  315 (29.49/11.33)	STI...ASAS..GNP.SIPIQT...L......T.NSSV..P.P
  336-  359 (44.35/22.13)	SNP...TSLL..GRP.IVPSAA...P......L.PQTT..P.P
  370-  397 (27.34/ 9.77)	SQPpfySSYP..SGPaIIP.AQ...P......LwPHPH..P.P
  412-  438 (24.05/ 7.38)	AGP...VGFL..GRP.IVGASAvttA......F.ANVQ..P.P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     215.92|      50|      53|     469|     518|       4
---------------------------------------------------------------------------
  439-  468 (30.60/11.81)	...................GVSTG...........GD...WKIQaSTNPGSE....QPTHASAEPDS
  469-  518 (87.09/46.42)	TGHGGQVNE..RLEENRNTGVQDS...........DA...WSAH.KTETGVVYYYNALTGESTYQKP
  519-  570 (76.53/39.95)	TGFKGE.PE..KVATQPVPVSWDK...........LAgtdWSIV.TTSDGKKYYYDSKQKVSSWQLP
  573-  616 (21.70/ 6.36)	VCEILKNAEsgSLKEG.STSVQDAatienkgvisiDA....STP.AIQTG.................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      60.36|      14|      43|     657|     670|       7
---------------------------------------------------------------------------
  657-  670 (23.25/11.58)	SSAAS..ELNGSRPAD
  676-  687 (18.54/ 7.70)	QQVAN....NGEKSKD
  697-  712 (18.57/ 7.72)	SSSDSddEEHGPSKED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.71|      13|      18|     623|     635|       9
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  623-  635 (22.64/12.35)	LRQTVAPASPSAL
  642-  654 (22.07/11.80)	LQDAGASSAPSAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.28|      19|     269|      39|      61|      12
---------------------------------------------------------------------------
   13-   33 (28.53/13.98)	GPqvEEPSQAKT....ASMAEPVAA
   39-   61 (25.74/11.79)	GA..SNPSTVAAaapgDALSGPVSA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14031 with Med35 domain of Kingdom Viridiplantae
Unable to open file!