<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14031

Description Uncharacterized protein
SequenceMATPASAVSDVGGPQVEEPSQAKTASMAEPVAAAAGLAGASNPSTVAAAAPGDALSGPVSATTSDSAAAPPPASPATPAAPPPASPAPLAAPGPPRPQFAGSLSYMAPGAPSPSPAFSYNVLPRAPPAPQVGGGGASLQPSSSPALTVAPMPASALQPPAPGQYFGSRPSFSYNVVSHANARLPTGQQFQLDTGANLAGQISRFVPPGSLQPPTPGHITRPSTAFPGSMAPNPPGSIQLPFSVPRPSSIPCGASAQQGNSDINNLKSDGPSASEVTPHAMQLSTGMPSNSPSTIASASGNPSIPIQTLTNSSVPPRPEVFGAARPSVPGQPSAIVSNPTSLLGRPIVPSAAPLPQTTPPIATQGVTPQNSQPPFYSSYPSGPAIIPAQPLWPHPHPPQPTGFQQPPFQSYPAGPVGFLGRPIVGASAVTTAFANVQPPGVSTGGDWKIQASTNPGSEQPTHASAEPDSTGHGGQVNERLEENRNTGVQDSDAWSAHKTETGVVYYYNALTGESTYQKPTGFKGEPEKVATQPVPVSWDKLAGTDWSIVTTSDGKKYYYDSKQKVSSWQLPPEVCEILKNAESGSLKEGSTSVQDAATIENKGVISIDASTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGASSAPSALAASSAASELNGSRPADAALKGQQVANNGEKSKDNNGDVNMSDSSSDSDDEEHGPSKEDCIRQFKEMLKERGVAPFSKWERELPKIVFDPRFKAIPSHSTRRAIFDHYVRTRAEEERKEKRAALKAAVEAYKELLEEASEDINQKTDYQEFKRKWGADPRFEALDRKEREVLFNEKVKAVQEKVQSMRKAVNADFKSMLRESKDITSTCRWAKVKENFRSDPRYKAMKHEERETIFNEYIVELKSAEQEAEQAAKAKVDEQAKLKERERETRKRKEREEQEMERVKMKIRRKEAVSSYQALLVEMIKDPKASWTESKPKLEKDPQGRARNPDLGQGDAEKLFRDHVKDLYERRVRDFRALLSEVITPEVAARTTDEGKTAINSWSEAKGLLRSDLRYNKLASKDRESIWRRYADDLTRKLRQSDTKEKEKDKPDTDGKQLRSSDPPRRR
Length1102
PositionUnknown
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.06
Grand average of hydropathy-0.721
Instability index52.74
Isoelectric point8.63
Molecular weight118281.50
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14031
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     414.31|      60|      60|     769|     828|       1
---------------------------------------------------------------------------
  714-  760 (55.93/30.19)	............I..RQ.FKEMLKE..RGVAPFSKWERELPKIVFDPRFKA....IpSHSTRRAIFDH
  769-  828 (96.00/57.17)	ERKEKRAALKAAV..EA.YKELLEEASEDINQKTDYQEFKRKWGADPRFEA....L.DRKEREVLFNE
  832-  891 (85.57/50.14)	AVQEKVQSMRKAV..NAdFKSMLRE.SKDITSTCRWAKVKENFRSDPRYKA....M.KHEERETIFNE
  900-  931 (40.78/19.99)	EQEAEQAA.KAKV..DE.QAKLKE............RE.........R.ET....R.KRKER.....E
  936-  997 (75.04/43.06)	ERVKMKIRRKEAV..SS.YQALLVEMIKD..PKASWTESKPKLEKDPQGRArnpdL.GQGDAEKLFRD
 1006- 1062 (60.98/33.59)	RVRDFRALLSEVItpEV.AARTTDEGKTAINSWSEAKGLLR...SDLRYNK....L.ASKDRESIW..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     224.04|      24|      35|     336|     359|       3
---------------------------------------------------------------------------
  100-  127 (27.29/ 9.74)	AGS...LSYM..A.P.GAPSPS...PafsynvL.PR.A..P.P
  133-  159 (22.46/ 6.22)	GGG...ASLQpsSSP.AL.TVA...P......M.PASAlqP.P
  226-  246 (23.34/ 6.87)	..P...GSMA..PNP...PGSI...Q......L.PFSV..PrP
  267-  288 (25.72/ 8.60)	SDG...PS....ASE.VTPHAM...Q......L.STGM..P.S
  292-  315 (29.49/11.33)	STI...ASAS..GNP.SIPIQT...L......T.NSSV..P.P
  336-  359 (44.35/22.13)	SNP...TSLL..GRP.IVPSAA...P......L.PQTT..P.P
  370-  397 (27.34/ 9.77)	SQPpfySSYP..SGPaIIP.AQ...P......LwPHPH..P.P
  412-  438 (24.05/ 7.38)	AGP...VGFL..GRP.IVGASAvttA......F.ANVQ..P.P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     215.92|      50|      53|     469|     518|       4
---------------------------------------------------------------------------
  439-  468 (30.60/11.81)	...................GVSTG...........GD...WKIQaSTNPGSE....QPTHASAEPDS
  469-  518 (87.09/46.42)	TGHGGQVNE..RLEENRNTGVQDS...........DA...WSAH.KTETGVVYYYNALTGESTYQKP
  519-  570 (76.53/39.95)	TGFKGE.PE..KVATQPVPVSWDK...........LAgtdWSIV.TTSDGKKYYYDSKQKVSSWQLP
  573-  616 (21.70/ 6.36)	VCEILKNAEsgSLKEG.STSVQDAatienkgvisiDA....STP.AIQTG.................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      60.36|      14|      43|     657|     670|       7
---------------------------------------------------------------------------
  657-  670 (23.25/11.58)	SSAAS..ELNGSRPAD
  676-  687 (18.54/ 7.70)	QQVAN....NGEKSKD
  697-  712 (18.57/ 7.72)	SSSDSddEEHGPSKED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.71|      13|      18|     623|     635|       9
---------------------------------------------------------------------------
  623-  635 (22.64/12.35)	LRQTVAPASPSAL
  642-  654 (22.07/11.80)	LQDAGASSAPSAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.28|      19|     269|      39|      61|      12
---------------------------------------------------------------------------
   13-   33 (28.53/13.98)	GPqvEEPSQAKT....ASMAEPVAA
   39-   61 (25.74/11.79)	GA..SNPSTVAAaapgDALSGPVSA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14031 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEQAAKAKVDEQAKLKERERETRKRKEREEQEMERVKMKI
2) ARLPTGQQFQLDTGANLAGQISRFVPPGSLQPPTPGHITRPSTAFPGSMAPNPPGSIQLPFSVPRPSSIPCGASAQQGNSDINNLKSDGPSASEVTPHAMQLSTGMPSNSPSTIASASGNPSIPIQTLTNSSVPPRPEVFGAARPSVPGQPSAIVSNPTSL
3) GRPIVPSAAPLPQTTPPIATQGVTPQNSQPPFYSSYP
4) KLRQSDTKEKEKDKPDTDGKQLRSSDPPRRR
5) MATPASAVSDVGGPQVEEPSQAKTASMAEPVAAAAGLAGASNPSTVAAAAPGDALSGPVSATTSDSAAAPPPASPATPAAPPPASPAPLAAPGPPRPQFAGSLSYMA
6) PAFSYNVLPRAPPAPQVGGGGASLQPSSSPALTVAPMPASALQPPAPGQY
7) SSAPSALAASSAASELNGSRPADAALKGQQVANNGEKSKDNNGDVNMSDSSSDSDDEEHGPSKEDCIRQF
8) SWTESKPKLEKDPQGRARNPDLGQGDAEKL
9) VTTAFANVQPPGVSTGGDWKIQASTNPGSEQPTHASAEPDSTGHGGQVNERLEENRNTGVQDSDAWS
903
181
343
1072
1
115
648
965
428
942
341
379
1102
107
164
717
994
494










Molecular Recognition Features






MoRF SequenceStartStop




1) AKTASMAEPVAAAAGLAG
2) ALDLIKKKLQDA
3) DGKKYYYD
4) KIVFDPRFKAI
5) RRAIFDHY
22
634
552
738
754
39
645
559
748
761