<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14029

Description Uncharacterized protein
SequenceMEAAGVGEHETWEPLFWTARCSPATSSAGSVQDELDDRSAAAEHKVFVAVPEEVSDGRSTLLWALHNLVREGSEIVIAHVHSPVPAIAQKRGHTSMKPEEIKEYRKQKRAKAEMSLDMYVQIVKCTREDLEVGCAKLIIETDNVAKGLEELISLHNITELVMGAAADRHFSKKMNTPKSKTALKLMKTAAPSCKMWFTCKGHLICTREANESLPAILPSPEESNEPLSPAYSISNQMGSMTLTELEYEESSHKGYISSSSAATKMTEWDYIFGDWGMIVYGSSGTDDAVSFSETAALPSVIGDTQKTTPVVHFTPEEPDSVYLLLASAYNQEDEPSVDEEKYEKLQDPCTEAKLLKEADDESNKIQKAEMDLLSALQRVQYDQNGEISLQIKELEDSYLHEVSQRKEIEKTLVRQRLEIDEMRRQRCTLSDKLQDSDKHNLILEQRITQIKSASKDHVEEITDHFIKQSSEESNKRQKIKMDLLSTLQRVKEVESLLQNEKAQREYMEEKVARQRTEVEETKRQRDKLYHDFQDLKDQKLKLEQADTTEETNRRRKAERDQLSYLQRIKDLEHQHIHQVKKQEIMEETMTRQMEEIQASKRKLLEMHGKHMTEIKAAMKVHEEKLANSKQLLQELQAKYDKLLHERDTAVMEAKALRRKNKQRALVTTETPNTEFSIVELQKATKGFDAEFKIGEDGFASIYKGFVRNTNIAIKLFHPRSLKGQARFYQEVAVLSRARHPNITTLVGVCPDNFALVYEFFPNGSLEDWLSCKKNMPPLTWKARTRIIGEICSALAFIHSHKPYPIVHGDLNLGNILLDANFVSKLGGLGICYFLREPDITITSLQSHPTETHKGTLYYMDQGEFKSAAELMLWSDVNSFGIIILRLLTGRSQQGIGEIVEEAMEKGNLHSIIDASAGEWPFVQANQMAHLGLRCVTLGSGRQPDLAGQVWEEVKQLMKAACLTTGPSRFASSTEDASPPSYFICPIFQEVMSDPHMAADGFTYEAEAIRGWLDGASTSPMTNLRLAHRKLTPNRALRSAILEWQQKQHGR
Length1050
PositionTail
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.06
Grand average of hydropathy-0.562
Instability index52.14
Isoelectric point5.88
Molecular weight119112.93
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14029
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     130.33|      21|      44|     472|     492|       1
---------------------------------------------------------------------------
  361-  379 (28.44/13.32)	..............ESNKIQKAEMDLLSALQRV
  472-  490 (28.63/13.46)	..............ESNKRQKIKMDLLSTLQRV
  491-  516 (22.35/ 9.11)	KE.......vesllQNEKAQREYMEEKVARQRT
  517-  535 (26.67/12.10)	EV............EETKRQRDK..LYHDFQDL
  536-  568 (24.24/10.42)	KDqklkleqadtteETNRRRKAERDQLSYLQRI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     235.21|      68|      75|      52|     119|       2
---------------------------------------------------------------------------
   52-  111 (93.52/57.12)	................EEVSDGRSTLLWALHNLV..........REGSEIVIAH.VHSP.......VPAIAQKRGHTSMKPEEIKEYRKQKRAK
  112-  187 (91.94/56.03)	AEMSLDMYvqivkctrEDLEVGCAKLIIETDNVA..........KGLEELISLHnITEL.......VMGAAADR.HFSKKMNTPKSKTALKLMK
  189-  247 (49.75/26.99)	AAPSCKMW..........................ftckghlictREANESLPAI.LPSPeesneplSPAYSISNQMGSMTLTEL.EY.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.06|      14|      15|     674|     687|       3
---------------------------------------------------------------------------
  674-  687 (24.65/17.20)	EFSIVE..LQKATKGF
  690-  705 (21.41/13.96)	EFKIGEdgFASIYKGF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     138.54|      35|      38|     570|     607|       4
---------------------------------------------------------------------------
  394-  425 (41.65/18.87)	LEDSYLHEVSQR.KEIEKTL..VRQ.RLEIDEMRRQ...
  571-  605 (57.66/31.74)	LEHQHIHQVKKQ.EIMEETM..TRQ.MEEIQASKRKLLE
  606-  644 (39.23/20.21)	MHGKHMTEIKAAmKVHEEKLanSKQlLQELQAKYDKLLH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.99|      36|      49|     866|     901|       5
---------------------------------------------------------------------------
  866-  901 (59.91/44.28)	SAAE..LMLWSDVNSFGIIILRLLTGRSQQGIGEIVEE
  915-  952 (59.08/43.56)	SAGEwpFVQANQMAHLGLRCVTLGSGRQPDLAGQVWEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.08|      18|      39|     743|     761|       6
---------------------------------------------------------------------------
  743-  761 (28.70/26.47)	TTLVG.VCpDNFALVYEFFP
  784-  802 (28.38/19.48)	TRIIGeIC.SALAFIHSHKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.97|      16|      19|     269|     285|       7
---------------------------------------------------------------------------
  254-  274 (22.88/16.74)	GYISSSSAATkmtewDYI.FGD
  276-  293 (20.09/ 6.97)	GMIVYGSSGT....dDAVsFSE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14029 with Med32 domain of Kingdom Viridiplantae
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