<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14028

Description Uncharacterized protein
SequenceMEAAGVGEHETWEPLFWTARCSPATSSAGSVQDELDDRSAAAEHKVFVAVPEEVSDGRSTLLWALHNLVREGSEIVIAHVHSPVPAIAQKRGHTSMKPEEIKEYRKQKRAKAEMSLDMYVQIVKCTREDLEVGCAKLIIETDNVAKGLEELISLHNITELVMGAAADRHFSKKMNTPKSKTALKLMKTAAPSCKMWFTCKGHLICTREANESLPAILPSPEESNEPLSPAYSISNQMGSMTLTELEYEESSHKGYISSSSAATKMTEWDYIFGDWGMIVYGSSGTDDAVSFSETAALPSVIGDTQKTTPVVHFTPEEPDSVYLLLASAYNQEDEPSVDEEKYEKLQDPCTEAKLLKEADDESNKIQKAEMDLLSALQRIKELEDSYLHEVSQRKEIEKTLVRQRLEIDEMRRQRCTLSDKLQDSDKHNLILEQRITQIKSASKDHVEEITDHFIKQSSEESNKRQKIKMDLLSTLQRVKEVESLLQNEKAQREYMEEKVARQRTEVEETKRQRDKLYHDFQDLKDQKLKLEQADTTEETNRRRKAERDQLSYLQRIKDLEHQHIHQVKKQEIMEETMTRQMEEIQASKRKLLEMHGKHMTEIKAAMKVHEEKLANSKQLLQELQAKYDKLLHERDTAVMEAKALRRKNKQRALVTTETPNTEFSIVELQKATKGFDAEFKIGEDGFASIYKGFVRNTNIAIKLFHPRSLKGQARFYQEVAVLSRARHPNITTLVGVCPDNFALVYEFFPNGSLEDWLSCKKNMPPLTWKARTRIIGEICSALAFIHSHKPYPIVHGDLNLGNILLDANFVSKLGGLGICYFLREPDITITSLQSHPTETHKGTLYYMDQGEFKSAAELMLWSDVNSFGIIILRLLTGRSQQGIGEIVEEAMEKGNLHSIIDASAGEWPFVQANQMAHLGLRCVTLGSGRQPDLAGQVWEEVKQLMKAACLTTGPSRFASSTEDASPPSYFICPIFQEVMSDPHMAADGFTYEAEAIRGWLDGASTSPMTNLRLAHRKLTPNRALRSAILEWQQKQHGR
Length1038
PositionTail
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.06
Grand average of hydropathy-0.558
Instability index52.19
Isoelectric point5.95
Molecular weight117737.49
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14028
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.73|      24|      42|     581|     604|       1
---------------------------------------------------------------------------
  581-  604 (41.25/29.17)	MEEIQASKRKLLEMHGKHMTEIKA
  620-  643 (39.49/27.59)	LQELQAKYDKLLHERDTAVMEAKA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     195.92|      39|      42|     384|     422|       2
---------------------------------------------------------------------------
  384-  406 (26.19/ 9.81)	.........................DSYLHE..V...........SQR....KEIEKTLVRQRLE
  407-  447 (44.34/20.94)	IDEMRRQRCTLSDKLQ.........DSDKHNliL...........EQRitqiKSASKDHV....E
  450-  505 (42.20/19.63)	TDHFIKQSSEESNKRQ...kikmdlLSTLQR..VkevesllqnekAQR....EYMEEKVARQRTE
  506-  535 (41.06/18.93)	VEETKRQR.................DKLYHD..F...........QDL....KD.QKLKLEQADT
  536-  580 (42.13/19.59)	TEETNRRRKAERDQLSylqrikdleHQHIHQ..V...........KKQ....EIMEETMTRQ...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     235.21|      68|      74|      52|     119|       3
---------------------------------------------------------------------------
   52-  111 (93.52/60.98)	................EEVSDGRSTLLWALHNLV..........REGSEIVIAH.VHSP.......VPAIAQKRGHTSMKPEEIKEYRKQKRAK
  112-  187 (91.94/59.82)	AEMSLDMYvqivkctrEDLEVGCAKLIIETDNVA..........KGLEELISLHnITEL.......VMGAAADR.HFSKKMNTPKSKTALKLMK
  189-  247 (49.75/28.80)	AAPSCKMW..........................ftckghlictREANESLPAI.LPSPeesneplSPAYSISNQMGSMTLTEL.EY.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.99|      36|      48|     854|     889|       4
---------------------------------------------------------------------------
  854-  889 (59.91/44.02)	SAAE..LMLWSDVNSFGIIILRLLTGRSQQGIGEIVEE
  903-  940 (59.08/43.30)	SAGEwpFVQANQMAHLGLRCVTLGSGRQPDLAGQVWEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.30|      15|      17|     660|     675|       5
---------------------------------------------------------------------------
  650-  667 (20.13/ 7.08)	QRAlvtTETPNTEFSIVE
  669-  683 (27.17/18.66)	QKA...TKGFDAEFKIGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.92|      18|      39|     731|     749|       6
---------------------------------------------------------------------------
  731-  749 (29.58/28.24)	TTLVG.VCpDNFALVYEFFP
  772-  790 (27.34/19.03)	TRIIGeIC.SALAFIHSHKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.63|      15|      21|     271|     291|       7
---------------------------------------------------------------------------
  254-  268 (26.56/24.22)	GYI.SSSSAATKMTEW
  276-  291 (22.07/13.02)	GMIvYGSSGTDDAVSF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.62|      16|      19|     691|     706|       9
---------------------------------------------------------------------------
  691-  706 (28.54/25.22)	KG...FVRNTNIAIKLFHP
  710-  728 (23.08/18.71)	KGqarFYQEVAVLSRARHP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14028 with Med32 domain of Kingdom Viridiplantae
Unable to open file!