<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14028

Description Uncharacterized protein
SequenceMEAAGVGEHETWEPLFWTARCSPATSSAGSVQDELDDRSAAAEHKVFVAVPEEVSDGRSTLLWALHNLVREGSEIVIAHVHSPVPAIAQKRGHTSMKPEEIKEYRKQKRAKAEMSLDMYVQIVKCTREDLEVGCAKLIIETDNVAKGLEELISLHNITELVMGAAADRHFSKKMNTPKSKTALKLMKTAAPSCKMWFTCKGHLICTREANESLPAILPSPEESNEPLSPAYSISNQMGSMTLTELEYEESSHKGYISSSSAATKMTEWDYIFGDWGMIVYGSSGTDDAVSFSETAALPSVIGDTQKTTPVVHFTPEEPDSVYLLLASAYNQEDEPSVDEEKYEKLQDPCTEAKLLKEADDESNKIQKAEMDLLSALQRIKELEDSYLHEVSQRKEIEKTLVRQRLEIDEMRRQRCTLSDKLQDSDKHNLILEQRITQIKSASKDHVEEITDHFIKQSSEESNKRQKIKMDLLSTLQRVKEVESLLQNEKAQREYMEEKVARQRTEVEETKRQRDKLYHDFQDLKDQKLKLEQADTTEETNRRRKAERDQLSYLQRIKDLEHQHIHQVKKQEIMEETMTRQMEEIQASKRKLLEMHGKHMTEIKAAMKVHEEKLANSKQLLQELQAKYDKLLHERDTAVMEAKALRRKNKQRALVTTETPNTEFSIVELQKATKGFDAEFKIGEDGFASIYKGFVRNTNIAIKLFHPRSLKGQARFYQEVAVLSRARHPNITTLVGVCPDNFALVYEFFPNGSLEDWLSCKKNMPPLTWKARTRIIGEICSALAFIHSHKPYPIVHGDLNLGNILLDANFVSKLGGLGICYFLREPDITITSLQSHPTETHKGTLYYMDQGEFKSAAELMLWSDVNSFGIIILRLLTGRSQQGIGEIVEEAMEKGNLHSIIDASAGEWPFVQANQMAHLGLRCVTLGSGRQPDLAGQVWEEVKQLMKAACLTTGPSRFASSTEDASPPSYFICPIFQEVMSDPHMAADGFTYEAEAIRGWLDGASTSPMTNLRLAHRKLTPNRALRSAILEWQQKQHGR
Length1038
PositionTail
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.06
Grand average of hydropathy-0.558
Instability index52.19
Isoelectric point5.95
Molecular weight117737.49
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14028
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.73|      24|      42|     581|     604|       1
---------------------------------------------------------------------------
  581-  604 (41.25/29.17)	MEEIQASKRKLLEMHGKHMTEIKA
  620-  643 (39.49/27.59)	LQELQAKYDKLLHERDTAVMEAKA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     195.92|      39|      42|     384|     422|       2
---------------------------------------------------------------------------
  384-  406 (26.19/ 9.81)	.........................DSYLHE..V...........SQR....KEIEKTLVRQRLE
  407-  447 (44.34/20.94)	IDEMRRQRCTLSDKLQ.........DSDKHNliL...........EQRitqiKSASKDHV....E
  450-  505 (42.20/19.63)	TDHFIKQSSEESNKRQ...kikmdlLSTLQR..VkevesllqnekAQR....EYMEEKVARQRTE
  506-  535 (41.06/18.93)	VEETKRQR.................DKLYHD..F...........QDL....KD.QKLKLEQADT
  536-  580 (42.13/19.59)	TEETNRRRKAERDQLSylqrikdleHQHIHQ..V...........KKQ....EIMEETMTRQ...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     235.21|      68|      74|      52|     119|       3
---------------------------------------------------------------------------
   52-  111 (93.52/60.98)	................EEVSDGRSTLLWALHNLV..........REGSEIVIAH.VHSP.......VPAIAQKRGHTSMKPEEIKEYRKQKRAK
  112-  187 (91.94/59.82)	AEMSLDMYvqivkctrEDLEVGCAKLIIETDNVA..........KGLEELISLHnITEL.......VMGAAADR.HFSKKMNTPKSKTALKLMK
  189-  247 (49.75/28.80)	AAPSCKMW..........................ftckghlictREANESLPAI.LPSPeesneplSPAYSISNQMGSMTLTEL.EY.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.99|      36|      48|     854|     889|       4
---------------------------------------------------------------------------
  854-  889 (59.91/44.02)	SAAE..LMLWSDVNSFGIIILRLLTGRSQQGIGEIVEE
  903-  940 (59.08/43.30)	SAGEwpFVQANQMAHLGLRCVTLGSGRQPDLAGQVWEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.30|      15|      17|     660|     675|       5
---------------------------------------------------------------------------
  650-  667 (20.13/ 7.08)	QRAlvtTETPNTEFSIVE
  669-  683 (27.17/18.66)	QKA...TKGFDAEFKIGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.92|      18|      39|     731|     749|       6
---------------------------------------------------------------------------
  731-  749 (29.58/28.24)	TTLVG.VCpDNFALVYEFFP
  772-  790 (27.34/19.03)	TRIIGeIC.SALAFIHSHKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.63|      15|      21|     271|     291|       7
---------------------------------------------------------------------------
  254-  268 (26.56/24.22)	GYI.SSSSAATKMTEW
  276-  291 (22.07/13.02)	GMIvYGSSGTDDAVSF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.62|      16|      19|     691|     706|       9
---------------------------------------------------------------------------
  691-  706 (28.54/25.22)	KG...FVRNTNIAIKLFHP
  710-  728 (23.08/18.71)	KGqarFYQEVAVLSRARHP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14028 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HIHQVKKQEIMEETMTRQMEEIQASKRKLLEMHGKHMTEIKAAMKV
2) KAQREYMEEKVARQRTEVEETKRQRDKLYH
563
489
608
518










Molecular Recognition Features






MoRF SequenceStartStop




NANANA