<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14017

Description Uncharacterized protein
SequenceMETLKKHLPVSVPEGLTELHKIAVRFEEKIYTAATSQSDYLRKISLKMLSMESQTKTQQNAGSAQVIPNQNPPGPAPGLPPQGSNPAQSSAIPLMSQQQTRQPNASTSVQGSLPSQTSTLQNLSGLPQNTMNNGLAQGTPQDMYAAQRQMAGRQQQQQQQQQAHNQLIYQQQKLLMSQKLQQNSLMQPHIQQQQTLLQSTQMQSSQQSMMQMSSGLQPGQTTIPQTQSMAMQSATQSGIQQNPLNSVQQSVQSLLQQPTQSVVRQQQHPQSMHQQPSLQQTQPTQQPNIPLQQQPQQLMGQQSNLQQNQLMNQQSGAVEMQQQQRLPVQSNNLLNMQQTQQMMNQQSMPLHQPQQLANQGNMSSLHQQQQQNQQQQQQQLLGTAPNVRMHMLQQQKPIQQPQQQQHAQQTSMGLMQPQSQQNQLQQPQQHMMSQFQSQPNQVQQQLGMQQRLQTSAGMLLQQNNIDQQKQYVQAQRGLQEAPSTSVDSTAQTGHPGGDLQEELYQMIKSLKDQYFAELNDLYNKISMKIQHIDNHMPAQKSAEQYEKMKGFKLMLERTLHFLQVNKNSIQPAFREKIPVYERQILSILSSQRRKPVQAPGQQIFQQSGGQAPSSNISQQHQTSQGLQQHDSHTNQMPQASIPSMNTGVQTSGAPGIQHVPAPQATNFGVPTTQQNVTNAPQAGSNLENAQGNSFNPVQHGSMGTALQQGSTGPMQGALNAQQQSSSNMISNNAMSTMQTNTNAMQANANSLQQLKQQHQEHQMMQSQQMKQRQQMMHQIQQKQMLQQQLPIQQLQKQQQQGQMPVPQLHSGNDVNELKVRQGAAIKSGMYQQLSQRNYYHQQIKQGGVFPISSPQNLQASSPQISHHSPQVDQHSLLQSQVKTGTPLHSANSPFVPSPSPPVAPSPMPVDSDKPLSNLSSLTSAGQAHQQTSLAPQTQSIAVNTPGISASPLLAEFTSADGSQVNLPTQVPTKSAAERPLDRLLKALRTTQRESLSAAVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITHDGSGASKKMKRDTSAMPLNVSSAGSVNDSLKQSYTVGTPELQSTATSRVKWQRAEVNHALMEEIQEINQQLIDTELHVSEDDAESFTASEGGEGTVIRCTFTAVAVSPSLKSMFASAQMSPILPLRLLVPASYPKCSPVLLDKFPDEQCRNSDDLSTKAKSKFSVLLRGLAEPMSLREIARTWDACARKVIAEYAQQTGGGSFSSSYGCWESCVGAS
Length1262
PositionTail
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.03
Grand average of hydropathy-0.772
Instability index71.85
Isoelectric point9.25
Molecular weight138949.19
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats
>MDP14017
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     116.71|      25|      25|     256|     280|       1
---------------------------------------------------------------------------
  256-  280 (50.30/14.73)	QQPTQ..SVVRQ.QQHPQSMHQQPSLQQ
  281-  307 (33.45/ 6.59)	TQPTQqpNIPLQ.QQPQQLMGQQSNLQQ
  425-  450 (32.96/ 6.35)	QQPQQ..HMMSQfQSQPNQVQQQLGMQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     210.68|      36|      40|     651|     686|       2
---------------------------------------------------------------------------
  203-  241 (38.21/ 7.82)	QSSQQSMMQMSSGLQPGQTTIPQTQ..SmAMQSAtqSG.....IQ.Q
  323-  351 (36.72/ 7.06)	QQRLPVQSN.......NLLNMQQTQ....QMMNQ..QS.....MPlH
  591-  628 (42.46/ 9.98)	QRRKPVQAPGQQIFQQSGGQAPSSNisQ.QHQTS..QG.....LQ.Q
  659-  699 (47.35/12.47)	VPAPQATNFGVPTTQQNVTNAPQAG..S.NLENA..QGnsfnpVQ.H
  757-  791 (45.95/11.76)	QHQEHQMMQSQQ.MKQRQQMMHQIQ..Q.KQMLQ..QQ.....LP.I
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     285.17|      59|     212|     140|     198|       3
---------------------------------------------------------------------------
   34-  104 (70.52/18.96)	ATSQSDYLRKislKMLsMeSQ.tKTQQNAGS...AQVI.....PNQNPPGPapglpPQ.GSNPAQSSAIPlMSQ..QQTRQPN
  105-  162 (75.96/21.13)	ASTSV..QGS.....L.P.SQtsTLQNLSGL....PQN.....TMNNGLAQ...gtPQ.DMYAAQRQMAG.RQQ..QQQQQQQ
  163-  198 (48.47/10.17)	AHNQLIYQQQ...KLL.M.SQ..KLQQNSLM...QPHI.....QQQQTLLQ................................
  376-  423 (45.90/ 9.14)	..QQ.....................QQLLGT...APNVrmhmlQQQKPIQQ.....PQ.QQQHAQQTSMGlMQPqsQQNQ...
  451-  496 (44.32/ 8.52)	.......................RLQTSAGMllqQNNI.....DQQKQYVQ.....AQrGLQEAPSTSVD..ST..AQTGHPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     241.99|      55|      57|     837|     893|       4
---------------------------------------------------------------------------
  796-  828 (43.39/12.93)	...KQQ..QQGQMPV..........PQL.HSGN.DVNEL............KVRQGAAIK...SG...
  837-  893 (98.04/42.74)	NYYHQQikQGGVFPISSPQNLQASSPQISHHSP.QVDQHSLL.......QSQVKTGTPLH...SANSP
  894-  924 (38.33/10.15)	............F.VPSP......SPPVAP.SPmPVDSDKPL..............SNLS...SLTSA
  925-  979 (62.22/21.89)	GQAHQ...QTSLAP..QTQSIAVNTPGIS.ASP.......LLaeftsadGSQVNLPTQVPtksAAERP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.63|      12|      56|     643|     655|       5
---------------------------------------------------------------------------
  643-  655 (19.16/11.37)	SMNTGVQtSGAPG
  701-  712 (21.47/ 8.55)	SMGTALQ.QGSTG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14017 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FPISSPQNLQASSPQISHHSPQVDQHSLLQSQVKTGTPLHSANSPFVPSPSPPVAPSPMPVDSDKPLSNLSSLTSAGQAHQQTSLAPQTQSIAV
2) KQYVQAQRGLQEAPSTSVDSTAQTGHPGGDLQEEL
3) PVQAPGQQIFQQSGGQAPSSNISQQHQTSQGLQQHDSHTNQMPQASIPSMNTGVQTSGAPGIQHVPAPQATNFGVPTTQQNVTNAPQAGSNLENAQGNSFNPVQHGSMGTALQQGSTGPMQGALNAQQQSSSNMISNNAMSTMQTNTNAMQANANSLQQLKQQHQEHQMMQSQQMKQRQQMMHQIQQKQMLQQQLPIQQLQKQQQQGQMPVPQLHSGNDVNELKVRQGAAIKS
4) QKLQQNSLMQPHIQQQQTLLQSTQMQSSQQSMMQMSSGLQPGQTTIPQTQSMAMQSATQSGIQQNPLNSVQQSVQS
5) QPTQSVVRQQQHPQSMHQQPSLQQTQPTQQPNIPLQQQPQQLMGQQSNLQQNQLMNQQSGAVEMQQQQRLPVQSNNLLNMQQTQQMMNQQSMPLHQPQQLANQGNMSSLHQQQQQNQQQQQQQLLGTAPNVRMHMLQQQKPIQQPQQQQHAQQTSMGLMQPQSQQNQLQQPQQHMMSQFQSQPNQVQQQLGMQQ
6) RKISLKMLSMESQTKTQQNAGSAQVIPNQNPPGPAPGLPPQGSNPAQSSAIPLMSQQQTRQPNASTSVQGSLPSQTSTLQNLSGLPQNTMNNGLAQGTPQDMYAAQRQMAGRQQQQQQQQQAHNQLIYQQQK
7) SADGSQVNLPTQVPTKSAAERPLDRLLKALRT
849
469
595
178
257
42
958
942
503
827
253
450
173
989










Molecular Recognition Features






MoRF SequenceStartStop




NANANA