<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14015

Description Uncharacterized protein
SequenceMPHTTEAPIGQVHDFFFTSMLAKSIDGAMQLSHRFGFQHLDFGHTVILFVLSLVNMLIDCILDDCGLPVTSADEHGNRNDMNFNGNGRSLDRGDEHREHLRRKNILMSIEVVEKVTANKIVQVFLRLVNRNTPENFNYLLRKLPLIGALKKKNTLSPYNLLDSLIMNIQNVISTDYQLDRKRLLGVPVSIQPCSSAVYSIFRAGKVSCWISFDMFMENAMDGRHLHAISSVEYLTELSKTLQVLNRATWQETFQALWISALRLVQRGPDASEGPFPSLDSRLCMLLAIIPLSIATIVKEEVGNLEGETTSVIRGQLVSSLQILRQFFGLLSPPPAAVHLANTAARKAAVVLSNLKNGRENMYTSFKDSPSIKAVGNMLHLIVEACITRNLIDTSAYFWPGYVVPLKESSPVQESPWPSLVEGSPLIELKDALMVTPASSVAELEKLYSFAVSGSPEEKLAASKILCGASLLRGWNIQEHVVQMVLKLLSTFLPLDSGPEGRYVQHMPMLHALVSGISSIDTVHILSMYGLVPEVASMLMPLCEIFGSLPPSDHRSCKFEEASVYSVFSCAFLSLLRLWKFHRPPIENALSRRGVSVWSELHLDFLLLLRNSHSSLKNLSKVTQSSIFELDTPFQKPVYIDSFPKLRAWYFQNQACIASTLSSACSRTTVLHVANMILKIICHNKVPKGGALSVNTQSTANSSTSSSPAGAQEDMCQWPTLPAWEILEAVPFVLEAVLTSCAHGRLSSRDLVTGLRDLAGFLPASLAAIVSYFSAEVTRGIWKPVMLNGMDWPSPAATLPVVESETKEVLAFAGVHINICPRPRFVMPMLPLPIAALISLSITVKMDEFSHLHGIIGQGIEICTTSSSWPTAQIIGALWSQKVRRWHDFIILACSQSPFTRDNTAVAQLIRSCFSSFIGPLVDGRSCFAANRGVANLLGQTFDEKAHRLAVAPGFLYMRSCRLFPNNSFVCEEILEVVVERAHALANACSSDRPARLRSDSLPLSAASSLVEQIASLAATMLCHAGGVNLICLLYEQIMPTLLLSGGKAKLGSAGQVCSIIEGFTLAHVLLVSGASIWGVGETSPAYTSIYTSKRQRVVDRHLEFMTRVMEGNIVLGCGDTTWRSYVVCFVNLLVNFVPTWIPEVKLKTLQKLASGLQKWHEGDLALSLLERGGAKTVTSVVESLL
Length1185
PositionTail
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.08
Grand average of hydropathy0.195
Instability index48.88
Isoelectric point7.73
Molecular weight130283.82
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14015
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     292.66|     102|     138|     110|     247|       1
---------------------------------------------------------------------------
  120-  232 (152.21/187.23)	IVQVF....LRLVNRNtPEN....FNYLLRKLPLIGALkkkNTLSPYNLLDSLIMNIQ....NVISTDY....QLDRKrLLGVpvsIQPCSSAVY.............SIFRAGKVSCWISF.DMFMENAMdGRHLHAIssVE
  252-  383 (140.45/90.48)	TFQALwisaLRLVQRG.PDAsegpFPSLDSRLCMLLAI...IPLSIATIVKEEVGNLEgettSVIRGQLvsslQILRQ.FFGL...LSPPPAAVHlantaarkaavvlSNLKNGRENMYTSFkDSPSIKAV.GNMLHLI..VE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     351.20|     104|     318|     398|     509|       2
---------------------------------------------------------------------------
  398-  509 (166.83/121.06)	WPGyvVP...LKESSP.VQESPWPSLVEGS....PLIE.LKDALMVTPASSVAELEKLYSFAVSgspeEKLAASKILCGASLLRGWN...IQE..................HVVQMVLKLLSTF..LPLDSGPEGRYVqhMPML
  615-  678 (40.29/17.33)	.......................................LKNLSKVT.QSSIFELDTPFQ............KPVYIDSFPKLRAWY...FQNqaciastlssacsrttvlHVANMILK.........................
  717-  829 (144.07/85.71)	WPT..LPaweILEAVPfVLEAVLTSCAHGRlssrDLVTgLRDLAGFLPA.SLAAIVSYFSAEVT....RGIWKPVMLNGM....DWPspaATL..................PVVESETKEVLAFagVHINICPRPRFV..MPML
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.14|      35|     559|       6|      42|       3
---------------------------------------------------------------------------
    6-   42 (61.37/53.60)	EAPIGQVHDFFFTSML......AKSIDGAmqLSHR....FGFQHLDF
  560-  604 (52.77/38.05)	EASVYSVFSCAFLSLLrlwkfhRPPIENA..LSRRgvsvWSELHLDF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.10|      30|      39|     935|     973|       5
---------------------------------------------------------------------------
  924-  933 ( 4.49/ 7.85)	....................RSC..FAANRGV....
  943-  973 (53.15/33.05)	EKAHRLAVA.....PGFLYMRSCRLFPNNSFVcEEI
  979- 1013 (44.46/20.68)	ERAHALANAcssdrPARLRSDSLPLSAASSLV.EQI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     105.12|      22|      49|     848|     869|       7
---------------------------------------------------------------------------
  848-  869 (41.51/25.15)	FSHLHGIIGQGIEICTTSSSWP
  885-  897 (26.05/13.01)	W...HDFI...ILACSQS...P
  898-  919 (37.56/22.05)	FTRDNTAVAQLIRSCFSSFIGP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14015 with Med33 domain of Kingdom Viridiplantae
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