<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14014

Description Uncharacterized protein
SequenceMLLAIIPLSIATIVKEEVGNLEGETTSVIRGQLVSSLQILRQFFGLLSPPPAAVHLANTAARKAAVVLSNLKNGRENMYTSFKDSPSIKAVGNMLHLIVEACITRNLIDTSAYFWPGYVVPLKESSPVQESPWPSLVEGSPLIELKDALMVTPASSVAELEKLYSFAVSGSPEEKLAASKILCGASLLRGWNIQEHVVQMVLKLLSTFLPLDSGPEGRYVQHMPMLHALVSGISSIDTVHILSMYGLVPEVASMLMPLCEIFGSLPPSDHRSCKFEEASVYSVFSCAFLSLLRLWKFHRPPIENALSRRGVSVWSELHLDFLLLLRNSHSSLKNLSKVTQSSIFELDTPFQKPVYIDSFPKLRAWYFQNQACIASTLSSACSRTTVLHVANMILKIICHNKVPKGGALSVNTQSTANSSTSSSPAGAQEDMCQWPTLPAWEILEAVPFVLEAVLTSCAHGRLSSRDLVTGLRDLAGFLPASLAAIVSYFSAEVTRGIWKPVMLNGMDWPSPAATLPVVESETKEVLAFAGVHINICPRPRFVMPMLPLPIAALISLSITVKMDEFSHLHGIIGQGIEICTTSSSWPTAQIIGALWSQKVRRWHDFIILACSQSPFTRDNTAVAQLIRSCFSSFIGPLVDGRSCFAANRGVANLLGQTFDEKAHRLAVAPGFLYMRSCRLFPNNSFVCEEILEVVVERAHALANACSSDRPARLRSDSLPLSAASSLVEQIASLAATMLCHAGGVNLICLLYEQIMPTLLLSGGKAKLGSAGQVCSIIEGFTLAHVLLVSGASIWGVGETSPAYTSIYTSKRQRVVDRHLEFMTRVMEGNIVLGCGDTTWRSYVVCFVNLLVNFVPTWIPEVKLKTLQKLASGLQKWHEGDLALSLLERGGAKTVTSVVESLL
Length902
PositionTail
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.07
Grand average of hydropathy0.287
Instability index52.28
Isoelectric point7.77
Molecular weight98195.20
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14014
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.45|      32|     374|     255|     288|       1
---------------------------------------------------------------------------
  255-  288 (57.00/38.87)	LMPLCeiFGSL..PPSDHRSCKFEEASVYSVFSCAF
  625-  658 (53.45/30.66)	LIRSC..FSSFigPLVDGRSCFAANRGVANLLGQTF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.49|      10|     374|     133|     144|       2
---------------------------------------------------------------------------
  115-  124 (21.77/11.77)	WPGYV..VPLKE
  133-  144 (15.73/14.08)	WPSLVegSPLIE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     204.89|      61|     374|     443|     520|       3
---------------------------------------------------------------------------
   21-   54 (36.34/13.06)	.......LEGETTSVIRGQLVSSLQI..LRQFFGLLSPPPAAV....................................
  443-  509 (86.35/87.62)	LEAVPFvLEAVLTSCAHGRLSSRDLVtgLRDLAGFLPASLAAIVSyFSAEV............TRGIwkPVMLNGMDWP
  523-  586 (82.19/43.29)	KEVLAF.......AGVHINICPRP.....RFVMPMLPLPIAALIS.LSITVkmdefshlhgiiGQGI..EICTTSSSWP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.52|      19|     283|     302|     324|       6
---------------------------------------------------------------------------
  302-  321 (29.39/28.22)	IENaLSRRGVSVWSELHLDF
  332-  350 (32.13/16.56)	LKN.LSKVTQSSIFELDTPF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.59|      20|      40|     360|     379|       8
---------------------------------------------------------------------------
  360-  379 (37.75/22.02)	PKLRAWYFQNQACIASTLSS
  403-  422 (32.84/18.26)	PKGGALSVNTQSTANSSTSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14014 with Med33 domain of Kingdom Viridiplantae
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