<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14013

Description Uncharacterized protein
SequenceMAAGAAVTELELERRVMAAVKASAERGDPPLLQAAEAARCIREGPTASAPGGGLALSQALVTNLCFAHNTAAMWKLLDQAMLSRLVDPLHTLALLTPRVVPSRREQPEAYRLYLDLLGRYAVAPVYPERMENKDMLAKSIDGAMQLSHRFGFQHLDFGHTVILFVLSLVNMLIDCILDDCGLPVTSADEHGNRNDMNFNGNGRSLDRGDEHREHLRRKNILMSIEVVEKVTANKIVQVFLRLVNRNTPENFNYLLRKLPLIGALKKKNTLSPYNLLDSLIMNIQNVISTDYQLDRKRLLGVPVSIQPCSSAVYSIFRAGKVSCWISFDMFMENAMDGRHLHAISSVEYLTELSKTLQVLNRATWQETFQALWISALRLVQRGPDASEGPFPSLDSRLCMLLAIIPLSIATIVKEEVGNLEGETTSVIRGQLVSSLQILRQFFGLLSPPPAAVHLANTAARKAAVVLSNLKNGRENMYTSFKDSPSIKAVGNMLHLIVEACITRNLIDTSAYFWPGYVVPLKESSPVQESPWPSLVEGSPLIELKDALMVTPASSVAELEKLYSFAVSGSPEEKLAASKILCGASLLRGWNIQEHVVQMVLKLLSTFLPLDSGPEGRYVQHMPMLHALVSGISSIDTVHILSMYGLVPEVASMLMPLCEIFGSLPPSDHRSCKFEEASVYSVFSCAFLSLLRLWKFHRPPIENALSRRGVSVWSELHLDFLLLLRNSHSSLKNLSKVTQSSIFELDTPFQKPVYIDSFPKLRAWYFQNQACIASTLSSACSRTTVLHVANMILKIICHNKVPKGGALSVNTQSTANSSTSSSPAGAQEDMCQWPTLPAWEILEAVPFVLEAVLTSCAHGRLSSRDLVTGLRDLAGFLPASLAAIVSYFSAEVTRGIWKPVMLNGMDWPSPAATLPVVESETKEVLAFAGVHINICPRPRFVMPMLPLPIAALISLSITVKMDEFSHLHGIIGQGIEICTTSSSWPTAQIIGALWSQKVRRWHDFIILACSQSPFTRDNTAVAQLIRSCFSSFIGPLVDGRSCFAANRGVANLLGQTFDEKAHRLAVAPGFLYMRSCRLFPNNSFVCEEILEVVVERAHALANACSSDRPARLRSDSLPLSAASSLVEQIASLAATMLCHAGMQHNRRIHISSCSPRFGCKHLGSRRNVASLHFNIHIQKATGCR
Length1183
PositionTail
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.07
Grand average of hydropathy0.119
Instability index52.80
Isoelectric point8.52
Molecular weight130175.59
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14013
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     277.31|      96|     138|     201|     338|       1
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  224-  327 (145.26/131.22)	IEVVEKVTANKIVQVF....LRLVNRNtPEN....FNYLLRKLPLIGALkkkNTLSPYNLLDSLIMNIQ....NVISTDY....QLDRKrLLGVpvsIQPCSSAVY.............SIFRAGKVSCWISF
  356-  480 (132.05/55.90)	LQVLNRATWQETFQALwisaLRLVQRG.PDAsegpFPSLDSRLCMLLAI...IPLSIATIVKEEVGNLEgettSVIRGQLvsslQILRQ.FFGL...LSPPPAAVHlantaarkaavvlSNLKNGRENMYTSF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     299.55|      99|     318|     513|     624|       2
---------------------------------------------------------------------------
  513-  624 (150.35/116.64)	WPGyvVP...LKESSP.VQESPWPSLVEGS....PLIE.LKDALMVTPAsSVAELEKLYSFAVSgspeEKLAASKILCGAsllrGWNIQE...HVVQMVLKLLSTF..LPLDSGPEGRYVqhMPML
  832-  944 (149.20/85.02)	WPT..LPaweILEAVPfVLEAVLTSCAHGRlssrDLVTgLRDLAGFLPA.SLAAIVSYFSAEVT....RGIWKPVMLNGM....DWPSPAatlPVVESETKEVLAFagVHINICPRPRFV..MPML
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.52|      21|     340|     775|     797|       3
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  775-  797 (32.75/28.75)	LSSACSrtTVLHVANMILKIICH
 1118- 1138 (34.77/23.13)	LSAASS..LVEQIASLAATMLCH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     124.17|      28|      33|    1039|    1066|       4
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 1010- 1033 (33.31/21.24)	QSP..FTrDNTAVAQLIRSCFSS.....FIG
 1039- 1066 (47.93/34.27)	RSC..FA.ANRGVANLLGQTFDEKAHRLAVA
 1073- 1102 (42.92/29.80)	RSCrlFP.NNSFVCEEILEVVVERAHALANA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.03|      26|      31|     677|     706|       5
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  677-  706 (34.82/35.26)	SVYSVFSCAFLSLLRlwKFHrPPIENaLSR
  710-  735 (46.21/27.13)	SVWSELHLDFLLLLR..NSH.SSLKN.LSK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.57|      19|     623|     335|     353|       8
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  335-  353 (34.45/24.26)	MDG.RHLHAI..SSVEYLTELS
  960-  981 (27.13/17.44)	MDEfSHLHGIigQGIEICTTSS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14013 with Med33 domain of Kingdom Viridiplantae
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