Description | Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MEFLRTCQTNAQVIGDFEAVAYQAFSVARSATQPAETLRDWSPDQDTSAVEAALRDRQLLIVRDATRPWLWLFTPAPAAVDKAGASPSPSPSPPDLPDLTGYTFQREQHGFTKALEFARPPISARNPTAATHPALMAAQHRASASRSNLTSAQPTTAEQPPSLDCFAVYDLFTSAVVALITLSLVKACGVVSLNYRTFVSSPMQTQTQTNHSEFASFPTPHWLSSVDVHWTSAGTLIVSTFTDKVNDIGSLDNTMSAVELKQLVGTVVRVAPNGMLGRVMSFDDPLQLAQDDTAQRPRRKRTRRSNLEQSIDKWKNAVKRWLTWKGYSLSDLDHTNAWVRLRTTFDSQPATPTTFAVPSEQDVLWPRALCYYHRASSEAVLPVSAETPLNTSDSVLRWFESVDSTGYRDPCDVAQEWFAAKAERDKSADTQRKAKKAEEDAFRRKEENHGLFPSSPLNTRMGTYGELQPVSGVYPTPPDGVAPGAPIFASDTPSVTGATSNVILASGGTNPAINLSAPQDSVSAEPPQQASTSPAFATDHEPISTSNNNDDLFGDDMDEGGYEENAVGEDDFDFFDGPNDGDVDMTDAPPRADTKVEAAQPPEKGAQTDTSLKAEEQEESADPLAALEEALSSSVNQPLNSPQTTEKKELAHAADGSTAKPHAAPIDQAGLQEREQKPPSTKAPTPPLSPSKVRETLKPSPKTALTIHIPPAQSQDRRGSSFGPLAFSRKMSVSDAKYQDGRYGIHTDVKAKEAHTATPASARPKSLRDVPLLTKFRYAAAVASATKLPKITPSIQGLNDDSEDESDTENESSVVSDEDAEDVQPTMQAPFSGGPITLAKRKLPTDGNATPLSVTSFAESFGGDLLELQTLHFDDNSLLNFEPSSWDWSLVKLAPPTVKLGAGVRYSMPLFPHPVGQVPDTPTSQPDLSFEIQDEKHWSGSDSINIAQMVTEQVISATLDILNEEIVSEDAIRRSSEMRWATVIKTVFPKAIDCALPALAAVNDVFPEMPAHAKSQQRIQARKPNETPAVPGSQIYPINPPFIRVRRGDSPWDLLPPAVTFWETLGLAPVNGSKNVVAFCIYPHSDSLRPGLEGFLLHMQLAYDSCKLGTHTRVNTVSEYESGLVPCRIATPAAPRAVYKALRETCVKLGKMLAARHANIQEQHESRVDAFIIYMVNPFEESSALWELCAAFWTLFQTYGQGPTHPSQPQKPDLVLQIVPIRYIASFDHPVILSSSIYSRLAREVYNRSPPNAEPEDKTPLPIASAPAFQLEESSPRNVPFKLQSEPPQDLLRENSYMHLAYAISLDGTWLTVAWTDSCGKSQATSTYHLGTRPFSELAKEIWVTTIGILQARKVHWRVCIARAGVMDRDELEAWVYLITCPTSLNLFITLLTVDPKPLYKFTPAAAIPTTAQSNPNTPTATPGAGVSPDPTIGLTPAATPSAADPPLDPTQDPDSRLVDSTDETWGVILAHRLHNTNATSVFSPALISGLLIKRGPGGPGEAPLSAPDNAPGPLAVGVNILWIGAVGSTRAATSPFPPTPGGSEPPAHPAAGSYLNAGSSGGGGQGPSSGASSAAAGNPPAQQQTSSLMWTPTPQTRATAENLLKEILQQFRGLGLLARLRGTRGSRYGSVPWHVAACLRGVEGMERVVGGR |
Length | 1653 |
Position | Kinase |
Organism | Epicoccum nigrum (Soil fungus) (Epicoccum purpurascens) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Pleosporomycetidae> Pleosporales> Pleosporineae> Didymellaceae> Epicoccum. |
Aromaticity | 0.07 |
Grand average of hydropathy | -0.379 |
Instability index | 51.28 |
Isoelectric point | 5.29 |
Molecular weight | 178490.74 |
Publications |
Annotated function |
Component of the SRB8-11 complex. The SRB8-11 complex is a
regulatory module of the Mediator complex which is itself involved in
regulation of basal and activated RNA polymerase II-dependent
transcription. The SRB8-11 complex may be involved in the
transcriptional repression of a subset of genes regulated by Mediator.
It may inhibit the association of the Mediator complex with RNA
polymerase II to form the holoenzyme complex.
ECO:0000256 RuleBase:RU364134 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP13956 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 249.67| 58| 403| 84| 148| 1 --------------------------------------------------------------------------- 84- 142 (102.81/45.06) GASPSP....SPS...PP....DLPDLTGYTFQ..REQHGFTKALEFARP..PISARNP.TAATHPALmAAQHRA 472- 542 (76.61/28.14) GVYPTPpdgvAPG...APifasDTPSVTGATSNviLASGGTNPAINLSAPqdSVSAEPPqQASTSPAF.ATDHEP 1538- 1586 (70.25/26.93) ...P.P....TPGgsePP....AHPAAGSYLNA..GSSGGGGQG........PSSGASS.AAAGNP...PAQQQT --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 673.99| 204| 403| 841| 1055| 2 --------------------------------------------------------------------------- 183- 311 (153.53/69.48) ....................................................SLVK.ACGVVSLNYRTFVSSPM......QT.QTQTNHSE..FaS.F...PTPHWLSSVDVHWTS..AGT.LIVSTFTDKVN..DIGSLDNTMSAVELKQlvGTVVR.VAPNGM........LGRVMSFDDPLQlAQDDTAQRPRRKRTRRSNLEQSI.......................... 316- 453 (136.65/59.09) NAVKRWLTWKGYSL.SDLdhtnawVRLRTT.FDSQpaTPTTFAvPSEQDvlW.......PRA.LCYYHRASSEAV.LPVS..AETPLNTSDsvL.RwFESVDSTGY..RDPCDVAQewFAAKAERDKSADTQRKaKKAEEDAFRRKEEN........HGLFP......................................................................... 848- 1055 (337.63/187.32) NATPLSVTSFAESFgGDL......LELQTLhFDDN..SLLNFE.PSSWD..WSLVKlAPPTVKLGAGVRYSMPLFpHPVGQVPDTPTSQPD..L.S.FEIQDEKHWSGSDSINIAQ..MVTEQVISATLDILNE.EIVSEDAIRRSSEMRW..ATVIKTVFPKAI.....DCALPALAAVNDVFP.EMPAHAKSQQRIQARKPNETPAVPGSQIYPINPPFIR.VRRGDSPWDLL 1393- 1469 (46.17/13.50) ..............................................................................................................................................................TVDPKPLykftpAAAIPTTAQSNPNTPtATPGAGVSPDPTIGLTPAATPSAADPPLDPTQDPDSRlVDSTDETWGVI --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 161.51| 46| 84| 594| 639| 3 --------------------------------------------------------------------------- 594- 632 (52.80/26.27) ................................................TKVEAA...QPPEKGAQTDTSLK.............AEEQEESADPLAALEEALS 633- 730 (37.88/16.52) SSVNQPLnspqttekkelahaadgstakphaapidqaglqereqkppsTK..AP...TPPLSPSKVRETLKpspktaltihippAQSQDRRGSSFGPLAFSRK 731- 768 (48.31/23.34) MSVSD.................................................akyQDGRYGIHTD..VK.............AKE.AHTATPASARPKSLR 769- 812 (22.52/ 6.49) ...DVPL............................ltkfryaaavasaTKLPKI...TPSIQGLNDDSEDE.............SDTENES............ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 36.00| 10| 1055| 74| 83| 7 --------------------------------------------------------------------------- 74- 83 (19.79/10.15) TP.APAAVDKA 1131- 1141 (16.21/ 6.71) TPaAPRAVYKA --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) GGYEENAVGEDDFDFFD 2) KSLRDVPLLTKFRYAAA 3) KTALTIH 4) YGIHT | 560 765 702 743 | 576 781 708 747 |
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