<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13948

Description Uncharacterized protein
SequenceMDKLRRDMDMAASRGTAVDWPQIQRTTTSVNQFITGLNTTINGGRKHIAESRKTDAGKVLRNKQGDEEYRYNDIAIPSQADTIRNLHPFPISPFPGTNEHLSGLTQTLLRKRLEPTEEKWVEDRLAKALEFAYVPPEWGIEPRKPAEKECKDSDTESGDIKPDNDGKPKTAFEKYNKRSKGTLTEDELVEKWNDAHASFFDPPETYQGDSGEEGEEEEEEEEEFEDAMDEDEPAQAAQEEEAKPKTPPPVVVIQEAEPPVHKPVPGMPVLDIGVSLKFIATGQL
Length284
PositionHead
OrganismEpicoccum nigrum (Soil fungus) (Epicoccum purpurascens)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Pleosporomycetidae> Pleosporales> Pleosporineae> Didymellaceae> Epicoccum.
Aromaticity0.06
Grand average of hydropathy-0.987
Instability index60.13
Isoelectric point4.65
Molecular weight31927.92
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13948
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.92|      15|      15|     209|     223|       1
---------------------------------------------------------------------------
  209-  223 (24.49/12.22)	DSGEEGEEEEEEEEE
  226-  240 (25.43/12.96)	DAMDEDEPAQAAQEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.70|      15|      17|     109|     124|       2
---------------------------------------------------------------------------
  118-  137 (20.72/16.26)	EKWvEDRLAKALEfayvPPE
  190-  204 (29.98/19.48)	EKW.NDAHASFFD....PPE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13948 with Med8 domain of Kingdom Fungi
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