<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13942

Description Uncharacterized protein
SequenceMVKGDKEPAPLYELRPPEWLPRTHVSGDVGYMGFFPPHPSDIEEKLSSKSVTEGLVLPVLVNAEHYSHQHEIRKRLMHEDALAALEDVMNQIFARKAESVPTIPPSSFRLPSRVTLNDAKRQAWFADLANPEIPLSKLGKNVPHGAKGHDLLDLLHTNDVAIPRAVWFLRVFGANETAGLRNRPSYNPTQYSVEWANVMTSYMKKQLAEIALPSAPRLVASIKQTFKGVLSDTEMRNKWISRFTYCLSLLRTFYAEGLVDNRTFLAWLVQQMGICNLAQAGFVVRLADEYLDGMLVSRALTRPFIEACLAKFVEIEGSPAKEFLPNTSNMLRNLITRAFVTLPEACISPRIHVQYGAVLEELLLDNFVVEGADNALQQNLQVLHQTVVDTLADVQKRNEAMLFQHLPPRVLGSLSSALSDIKLLNSISGKTDMTTVSLFDDSSEISPSFSRKLDFLLTWSVTPLQYGDHRPYAAACLLLIWRNKAEERAIRRDAPSPDGQIQDLLFDWLDNSDVAGDPGNLPAVALLFAQLVKHGLFSYGLYMQRLIARGETGLSFSDAQGSRHRQFLRWIPLHSSDTSLISQRKIILYGFRVRETPEDANEREIRKEIRAVMPELFGGTPQITEPLTTMFWKSCGTLLSAPRYEQLKTIKQWFLPLYKRFLISHTEPSFEIEGLILRVFTLSTIIMARVRSYGSILDMSLCTLEHANSSSLLTAVIETIRQHIEVWACMDRMQDVASALWAVHQTWRARGSQNRVLLKLLAEVDNDRYLEPAAREQMLSDISAFSHALFPSNETPDAVPSVLPEILVLATDPNPEAPSLLANSLWYKYMTSPDWAWKVWDNTVASLRQVPLMMEDVPGRRACALRYATFLLHVDQHLPRGFDEQIRSWFLGSGKNEVTALTPDAWDVVTFVLLYLICYGALTTTTILESLLYPVWQAGANVTSEEQAQSLETLLTSVNTLFEHLLLRDECGTGLPPVDVFEAQGLQTRRRDVFREPHFSTLVTNFPALVLIEQNRYLPEPLRVASMTLRRTICRVNVFRQGIYRDLDAVRLTFEKLLESQNVPDELHEPLVSALRLMLNDPGQDGPVNAAEWSSASSLLSPWKLAATSIEIRLTIKQLGEGMARESTRLAACASLDKLTTAVFYHCKSPEEADFVAEMITDVDRTVAGKFVNAGLRRIVDIFRETDSANKIESMTRLVSCAGEILRLLANIVAPFRKDASLPQLDQTVQDHLFAVLCAKIAEMTDLMMSLLQRPWNEDVSRGTQAVIFLARLLQFYLGFQGTWSQQARDLGEELCANLTRLALIHGAGEGLNLLAFPLIMDTLCYTLDEIPTDMKATVPYDPFRNYPEFNLSDLPSDMPPEYKARLRTMLPYVALNPVVEDLVYATRDASGTIVHAVPVQNRPWEWTEYLGDVPGAEPRGGADERAGDDGRPTVRNSASLSLELFEARLTGDRVIPAEGTALKDDLMAEENLRALQDDLYAEGAFRRDWRETRVSLNDAPTAPTARPSRSAEQEDSGPPLPGFGGHAAAAAAADARTSSRRPSPASSVRSAASGQLGSATSLRQSPAHPLSRLSVSTAGDVIDVDALEAGTSGSGSTNKRKAMGGIAEEDDDVQIVDGPMPAPSRASKRTKAKTAGKTTAKGKKK
Length1646
PositionKinase
OrganismTrametes coccinea BRFM310
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Polyporales> Polyporaceae> Trametes.
Aromaticity0.08
Grand average of hydropathy-0.170
Instability index49.87
Isoelectric point5.69
Molecular weight183236.18
Publications
PubMed=26692083

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13942
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     174.56|      57|     326|      21|     164|       1
---------------------------------------------------------------------------
   72-  149 (81.81/178.91)	IRKRLMHEDALAALEDvmnQIFARKAesvptippssFR...LPSRVTLNDAK.....RQAWFADLANPEIPLSKLGknvphgakGH
 1463- 1527 (92.75/32.06)	LKDDLMAEENLRALQD...DLYAEGA..........FRrdwRETRVSLNDAPtaptaRPSRSAEQEDSGPPLPGFG........GH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.94|      28|     471|       2|      30|       4
---------------------------------------------------------------------------
    2-   30 (50.76/31.83)	VKGDkEPAPLYELRP..PEWLPRTHVSGDVG
  490-  519 (47.18/25.16)	IRRD.APSPDGQIQDllFDWLDNSDVAGDPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.76|      10|      17|     953|     963|       9
---------------------------------------------------------------------------
  953-  963 (12.51/10.81)	TLLTSVNtLFE
  973-  982 (19.25/11.46)	TGLPPVD.VFE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.33|      25|     187|     985|    1010|      12
---------------------------------------------------------------------------
  985- 1010 (40.38/23.50)	GLQtRRRDVFREPHFSTLVTNFPALV
 1175- 1199 (41.95/20.63)	GLR.RIVDIFRETDSANKIESMTRLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.02|      21|     741|     159|     180|      13
---------------------------------------------------------------------------
  159-  180 (34.68/26.08)	DVAIPRA......VWFLrVFGANETAGL
  875-  901 (34.34/20.60)	DQHLPRGfdeqirSWFL.GSGKNEVTAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.05|      33|     148|    1222|    1257|      18
---------------------------------------------------------------------------
 1222- 1257 (54.98/43.02)	LP..QLDQTVQDHLFAvlcAKIAEMTDLMMSLLQ.RPWN
 1371- 1406 (50.08/30.61)	LPyvALNPVVEDLVYA...TRDASGTIVHAVPVQnRPWE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13942 with Med12 domain of Kingdom Fungi
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