<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13934

Description Uncharacterized protein
SequenceMSTTTSNASDATPAVLPSDAAASAAMPPPALPSTATESTQTANAPLSDLQTLRDHIQALTDLNNRLQSLRHIPALLLRPPTVGVHALPQSSLLRHEFQELKEFAGAVRSEKIQEALKAARKSEGAEPKMLGFDVRRDNLKRRRPPSPASPQPYRATEPKSSALLLHEDENVEPLGLDGLPAYIRQHNKSNHHKLHVVAPRKDRPLQCPIVLRFTIPDVAVVYLTLNRSTAEQAALVVESATAFGPREQKPTHSQSDFTVYQQLSQQLARVLQSEPWVPLQVFVTLLNSYENLFTEPCEVCGRVLSAEAHTPPVVRVRKQPSTESPSAWGVHHVACK
Length336
PositionTail
OrganismTrametes coccinea BRFM310
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Polyporales> Polyporaceae> Trametes.
Aromaticity0.04
Grand average of hydropathy-0.399
Instability index73.39
Isoelectric point8.66
Molecular weight36908.50
Publications
PubMed=26692083

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13934
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     131.32|      38|      43|      29|      70|       1
---------------------------------------------------------------------------
    2-   26 (29.16/11.18)	.........STTTSNA.........SDATPAVLPSDAAASAAM
   29-   70 (52.35/37.30)	PALpsTATESTQTANA.PLSDLqtLRDHIQALTDLNNRLQSLR
   73-  109 (49.81/24.72)	PAL..LLRPPTVGVHAlPQSSL..LRHEFQELKEFAGAVRS..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      29.31|       9|      43|     123|     133|       2
---------------------------------------------------------------------------
  123-  133 (12.42/12.80)	EGAEPkmLGFD
  169-  177 (16.89/ 8.90)	ENVEP..LGLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.99|      22|      31|     269|     290|       4
---------------------------------------------------------------------------
  269-  290 (39.68/24.72)	RVLQSEPWVPLQVFVTLLNSYE
  302-  323 (38.31/23.62)	RVLSAEAHTPPVVRVRKQPSTE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.22|      15|      26|     152|     166|       6
---------------------------------------------------------------------------
  152-  166 (26.68/16.08)	P.YRATEPKSSALLLH
  180-  195 (25.54/15.12)	PaYIRQHNKSNHHKLH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13934 with Med27 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KIQEALKAARKSEGAEPKMLGFDVRRDNLKRRRPPSPASPQPYRATEPKSSALLLHE
2) MSTTTSNASDATPAVLPSDAAASAAMPPPALPSTATESTQTANAPLSDLQTLRDHIQALTDLNN
111
1
167
64










Molecular Recognition Features






MoRF SequenceStartStop




NANANA