<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13912

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMVGASSTSSAVAVRATSPQGIYAKLWHAQSEIGLALDVLNIIISSYQINPGTTGGIGSTNNGAMPNSALPPGSLKCDYVPRAPLSLQTMISNEKMALGSKKHQLRSAAAILMQGAQKLKKVMADESQFWGGALRLRKNNWCIVSAKTGHHSTNRITGGSQLYVHYGFQDVGSLFGSRSYAELVRNQSFSGPKKATSIELNFPNKTGKVIVVSLVQQGASHTFKMPTSRTKSTLHNQLLDAQNTLFDGELYHELTNEARSMNNSVSIVDNEIFMPISDELELKIAYRMPTSENIPNLSLSSSEDMVMGESHDGIENPNMTNSLNRTANILRCAMQLMQHRRYRQNIKERTDSFFKSSRPGGGRTAGSFGHIQQTLQQRPTAVLSMTLQALQYYSFSKRIRDVIGRATRNIKQNWWEPVDVYSIDVKASTPIQSNSELLIPGTSNFSSRGTTTNHGMGSVVSINLGDKAPAVRFVIRSHPAPCVILQLTDRPSAPIMHVTEFERVLEQELTTRAIGRICEILNSIKSWNDSLPTLQSPKFVIDIDKRCVGVFHMLRRDNSTALSTSTVILQLDISAERAISISINTKHGSINRYKIVYLEDQQLQLPQSEDAGTNNSHPYDTANSSMTLHQTAGRTMEGFREWLRQSIIAEL
Length650
PositionHead
OrganismLobosporangium transversale
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mortierellomycotina> Mortierellomycetes> Mortierellales> Mortierellaceae> Lobosporangium.
Aromaticity0.06
Grand average of hydropathy-0.342
Instability index49.17
Isoelectric point9.40
Molecular weight71814.73
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13912
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.03|      47|      68|     142|     189|       1
---------------------------------------------------------------------------
  142-  189 (77.56/59.75)	IVS.AKTG.HHSTNRITGGSQLYVHYGFQDV.GSLFGSRSYAELVrNQSFS
  210-  259 (67.46/46.54)	VVSlVQQGaSHTFKMPTSRTKSTLHNQLLDAqNTLFDGELYHELT.NEARS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.48|      40|     304|     285|     326|       2
---------------------------------------------------------------------------
  285-  326 (62.64/45.08)	YRMPTSENiPNLSLSSSEDMVMGESHDgIENPNMTNSLNRTA
  592-  631 (70.84/42.01)	YKIVYLED.QQLQLPQSEDAGTNNSHP.YDTANSSMTLHQTA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.58|      21|      37|     368|     388|       3
---------------------------------------------------------------------------
  368-  388 (35.61/22.75)	GHIQQTLQQR...PTAVLSMTLQA
  403-  426 (29.97/18.11)	GRATRNIKQNwwePVDVYSIDVKA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13912 with Med17 domain of Kingdom Fungi
Unable to open file!