<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13908

Description Uncharacterized protein
SequenceMSKYPGHHPVNHPRGGFPPYPPGSGSGPGQVGPGGTNMNNIPGQGLPGPTRIGFPSGRPMGNMSLNNQGHNIGGGYPGQFPPSNMSYGNSNNNNNMVNPNNNSNSNNSQMPYGHASQHTTPTHSPYSSSPSSSAYSNSNKPHSTAPLRRYILLPPPRKRKLHKTSDLGYPGVFPQRPGQDEDQMTPTNVKAGFMDKGIIQNDIVSAQGILADGLQDPKKLRELGAFMVEVLKKRQESNRITGPSTFRPPSRATLNDQKKEQWLSDLSGTVSLRRLSKSVPHGFKSEKLLEALAQRQVPLLRATWYIKIVALSEMQPQRNRPGITQHQYSAEWTAIVNLFLRKQLLEINPNPTSKPATSALNPASGTQNVKPWANEEAKEKWEAKWRYSVMLTKWQYNEGLLDHRHFLRVTVEQLTTLGFEQVTLLLSLISMFLSEYARSRLLMRLLIEGLLSTLQSVQKHPSYNQPVFRYSDLELELKRMIQSIFLSTPDMFVIPKAWAIHSSLLQQVLLQDMQTTVYKPAVFPNVVSVLEAQYKMIHARVNVFTGLSSIGSDQDWKSARLGNHVDILDHIDHTSDLEQVAQEYFSEAVDSYTPSSIPSTPSKMTFSPATTPLAGTSLPIPPSSPSTSHTSSSSQWIDRVWKSRLNTLCEWAITNSRYGHHRVYIACTLLGIWRDDPILSPRIPLEERTMVLQGALLEFLDTFNGSQNQTSSYGDASHGHQQHSSHGNEDTLDAMARLFGNLIHDRLFSYQQYLQRLIARGDLQPSKRCQESTIRHLKYLQSFPLHKGAKPHHLNQRRVVLFGVNGEDEYDRECFESIISQVKAKLPYMFSPEAGNMTAPVKDSPQDSVELAMPLSIQLTELILSASRFCQLRVTTRLLDTVKSFVVKKIEVGEDNWRVMTSPGLSLMNARQFATVVNVMEVASDFHSLYDVCTWLLEHTADKTLLTYIVNIAKKHYMVWAAMGVLIKFSQAILDKHYELQAKSVNIKALPRYLAFEAHNVPEDIRAQMEGDLITGKPATTSGVNIPSQYFELQNLLSDSSPTAVYNLASVLYSKYGGLAHWPLQLFSECVDALHKLDSTLTDDPTSHGCPPSTSARMDLIRATRLYAELLVEMAERVGNGCMNDVVLSWLRLHDLDWMMSVLGSVSTNEEAAYEKHPMWFLSFMMQLVIQGFCSIEVLVQDMCGTMLNKIANNIQQPSSHMELHGEHLEEIQMQQTMPDQSALRLCLTMVVLLRLLLLEDAFSNPRASHAYGSSHHTLSLELHIQRLGIPFTIAELHALQTQRYSRLMAMQQQSRNEQEWSRETETNPLSSQPSLLEQRMMLVQFQICRDLVWIESCLPLNHKVLHEIHEYRKDWALSADWLREKCLANVDDAYKMFLQTRMGQGQWRSDLSGSQANTESSNKNNKKHSEVVDRKMMETFQMLVAESHESLLLLDTYGEGSLTASMVHQRKFRSIFSRVDPWTFDRRKVEFWLLLDNVMMERTAREKRSGSDGGLSKENNGSSGPVPSSASSSSGFMMMEGVTMTAGPGNPSEGAEPVGLTSSGGGAGMNTGVEGDSLQQLIQIFFQEFVLSENSNKELLGRMIIGMRSDAVEEFIRFGYSILAGNPNDPFPHNVMIAHRPVTSTAYVKIVANFHYIMEILLKEGQPTVPLSLVADENSTQSSVTAVAPSPTPSASNSQPTNNNANNNANNNQTVDPLQGLDAAQLESRIGFAKSLLLQLKKFEDRIKFFDVMHAIGCSYEEASKVIQDSETAGADMEDLLLNASMQRSHLAQSQLHLMSENNPFQQQQQQQKPAHSTTSDVSNASSAVYLIDLRTSLCLRLRLLVPLLPVILQQPSPAACDLATYVIRLTNLLVSSIVHGQGSEERLFEFCLDMVSCLMDEVLLLSASSRDASDDKLDPNGVCKQDFQNFALSAA
Length1917
PositionKinase
OrganismLobosporangium transversale
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mortierellomycotina> Mortierellomycetes> Mortierellales> Mortierellaceae> Lobosporangium.
Aromaticity0.07
Grand average of hydropathy-0.350
Instability index47.83
Isoelectric point6.39
Molecular weight214244.99
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13908
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.10|      15|      30|    1287|    1301|       1
---------------------------------------------------------------------------
 1287- 1301 (28.10/23.39)	RLMAMQQQSRNEQEW
 1320- 1334 (29.00/24.45)	RMMLVQFQICRDLVW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.56|      19|      19|      22|      40|       2
---------------------------------------------------------------------------
   22-   40 (40.32/18.26)	PGS..G.SG.PGQVG.PGGT...NMNN
   42-   62 (29.35/11.28)	PGQ..GlPG.PTRIGfPSGR...PMGN
   68-   92 (25.89/ 9.08)	QGHniG.GGyPGQFP.PSNMsygNSNN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     131.01|      47|     477|     109|     165|       3
---------------------------------------------------------------------------
   99-  148 (78.75/49.82)	PNNNSNSNNSQMPY.GHASQH...............................................................................................................................................................................................................................................................................................................................................................................................................................tTPTHSPysSSPSSSAYSNSNKPHSTAPLR
  156-  176 (16.62/11.64)	PRKRKLHKTSDLGYpGVFPQR.............................................................................................................................................................................................................................................................................................................................................................................................................................................................
  593-  619 (35.64/13.15)	.....................pgqdedqmtptnvkagfmdkgiiqndivsaqgiladglqdpkklrelgafmvevlkkrqesnritgpstfrppsratlndqkkeqwlsdlsgtvslrrlsksvphgfksekllealaqrqvpllratwyikivalsemqpqrnrpgitqhqysaewtaivnlflrkqlleinpnptskpatsalnpasgtqnvkpwaneeakekweakwrysvmltkwqyneglldhrhflrvtveqlttlgfeqvtlllslismflseyarsrllmrlliegllstlqsvqkhpsynqpvfrysdlelelkrmiqsiflstpdmfvipkawaihssllqqvllqdmqttvykpavfpnvvsvleaqykmiharvnvftglssigsdqdwksarlgnhvdildhidhtsdleqvaqeyfseavdsyTPSSIP..STPSKMTFSPATTPLAGTSLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.74|      32|      34|    1553|    1586|       4
---------------------------------------------------------------------------
 1550- 1583 (47.14/33.60)	MNTGVEGDSLQQLIQIFFQefVLSENSNKELLGR
 1584- 1615 (57.60/34.83)	MIIGMRSDAVEEFIRFGYS..ILAGNPNDPFPHN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.80|      16|      34|     950|     965|       5
---------------------------------------------------------------------------
  950-  965 (30.52/20.66)	VNI.AKKHYMVWAAMGV
  985- 1001 (24.29/14.82)	VNIkALPRYLAFEAHNV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.16|      44|      84|     660|     709|       6
---------------------------------------------------------------------------
  660-  709 (70.63/50.95)	HHRVYIACTLLG..IWRDDpiLSPRIPLEERTMvlqgALLEFLDTF...NGSQ....NQ
  744-  796 (64.53/33.58)	HDRLFSYQQYLQrlIARGD..LQPSKRCQESTI....RHLKYLQSFplhKGAKphhlNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.88|      16|      84|     545|     561|       7
---------------------------------------------------------------------------
  524-  541 (22.19/11.11)	PNVVSVLEAQ.YKmiHARV
  545-  561 (22.69/16.88)	TGLSSIGSDQdWK..SARL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.24|      36|     484|    1147|    1260|       9
---------------------------------------------------------------------------
 1225- 1260 (61.40/135.92)	RLCLTMVVLLRLLLLEDAFSNPRASHAYGSSHHTLS
 1710- 1745 (61.84/10.21)	RIGFAKSLLLQLKKFEDRIKFFDVMHAIGCSYEEAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.01|      18|      20|     288|     305|      11
---------------------------------------------------------------------------
  288-  305 (30.94/18.18)	LLEALAQRQVPLLRATWY
  311-  328 (34.07/20.83)	LSEMQPQRNRPGITQHQY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13908 with Med12 domain of Kingdom Fungi
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