<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13889

Description Uncharacterized protein
SequenceMVANNFEQHVFNAAHSKQEYGQLCSKRLQDIRQKIVQKQQQQAMAANGGQGLMGHSGQEGAHQMQQQANMHALMAQRAQQQQQQQQKQGGQQNAGLDARTLLMQQQATMLRNVAGGGGSHAGSPANQRANLSTLNQPMNGSQQTTPVMQQRQPLNHMQQQQQQQAQQQNQGQRQAAFTNGQQGSAVSTNGNPTNGMIPAFKQFGGNPVQAQQLQAILRQVQEYQAKIGGQPINLKELTPQKLMQMYHAQKAHAAQQAQRFALQEESAKQQGRPTSQGQQQQQQAVGSQAGGPAYIAAQAQMRAKLQAGQHQQQQQQQAHHQQQQQQQQAQIQDHLRSMQAQQKALQQHSHQQALQQQQQQQQQQHMQQQQQQQQAQAQAQHQASLLQQQQHLQQQRQAPSTTTSSGGGQAITNDKTNPVNYPIPAALFSRFVNLPAGVTTWQQILELGKRRQLTPEQINNVRMVYNLHHSIILHSMGLSKPNNGAQMQQQQQQQQQQQQVPTNVNQQQMQQQQQLQMQLQHQQQQQQLQNQNAQIAAPKAQRVPSRGQSSLEEGSAQQPYPMQGLAQHPQLNAHQLQQLQKQQQNKTLALQQQQQQLQQAVKRGKQDLQTPVMAAAQVSPQAVADRPSPSKRRRANSKAQPVATPVLQGALPTPAAVEQFSTAIPAQNAARPNTATAPTTQKNELMALLLRACPPAEQRRLSLEVRAMEEVIANRKRNNAFKDLSAQEKVQIQEMVRSMMFTTGRIDQLATLYYIVTKNAQQVRQLLEMKYLFKEQVMLLSQDKYTLDAASLAKLSANCDRMFANVREHLIQTAKALTKANQQQQTQRQAGAPIVPPAVAATPEAYVNTPSPADSGSAGSPFGKPLKQEDLKLPSHRKKPTKQESVQNVTSAPSTTAAANKVEKQAQREAIASKAAKAKEAELLKKQAEREAAEARAIQAEAEADPLAWAIKQVELFCLTEEQDAAKELAATQNGQPGSSDKMGAPSIKKQAVAGPTPSTILKTPQPFVAAQTPITTAHSLLAAKESSKSGYPLTPPRSDKLTQRVLQTELLLEPGAGLFDMLASMEEAEDAAATATAAAGGFLGAVEEDVDESALWSMSVPLSNSFAIA
Length1110
PositionTail
OrganismProtomyces lactucaedebilis
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Taphrinomycotina> Taphrinomycetes> Taphrinales> Protomycetaceae> Protomyces.
Aromaticity0.03
Grand average of hydropathy-0.826
Instability index61.13
Isoelectric point9.81
Molecular weight121947.37
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13889
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     250.75|      44|      45|     304|     347|       1
---------------------------------------------------------------------------
   76-  112 (49.30/ 7.66)	Q..RAQ.QQ....QQQQQ....KQGGQQNAGLD.ARTLLMQQ....QA.TMLRN
  137-  188 (46.20/ 6.63)	PMN.GSQQTtpvmQQRQPLNHMQQQQQQQAQQQ.NQGQRQAAftngQQgSAVST
  304-  347 (84.71/19.42)	KLQAGQHQQ....QQQQQAHHQQQQQQQQAQIQ.DHLRSMQA....QQ.KALQQ
  350-  394 (70.53/14.71)	HQQALQQQQ....QQQQQQHMQQQQQQQQAQAQaQHQASLLQ....QQ.QHLQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     269.20|      67|      67|     477|     543|       2
---------------------------------------------------------------------------
  199-  275 (79.63/21.04)	AFKQFGGNPVQAQQLQAILRQvQEYQakigGQPINLKELTPQKLMQMYHA......QKAH....AA....QQA..QRF...ALqeeSAKQQGrptS
  486-  555 (114.57/34.87)	QMQQQQQQQQQQQQVPTNVNQ.QQMQ....QQQQLQMQLQHQQQQQQLQN......QNAQ...IAA....PKA..QRVpsrGQ...SSLEEG...S
  556-  631 (75.00/19.20)	A.QQPYPMQGLAQHPQLNAHQlQQLQ....KQQQ.NKTLALQQQQQQLQQavkrgkQDLQtpvMAAaqvsPQAvaDRP...SP...SK........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     162.33|      44|     214|     637|     680|       3
---------------------------------------------------------------------------
  637-  668 (41.73/20.39)	.............SKAQPVATPVLQGALPTPAAVEQFST..AIPAQN
  669-  709 (63.90/35.61)	AARP.NTATAPTTQKNELMA..LLLRACP.PAEQRRLSL..EVRAME
  713-  759 (56.70/30.67)	ANRKrNNAFKDLSAQEKVQIQEMVRSMMFTTGRIDQLATlyYIVTKN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     162.88|      51|     152|     802|     852|       4
---------------------------------------------------------------------------
  802-  836 (45.12/17.46)	........................MFAN.VREHLIQ.TAKALTKANQQQQTQRQAGAPIVP
  837-  893 (62.28/26.83)	PAVAATPEAYVNTPSPadsgsagsPFGKpLKQEDLK.LPSHRKKPTKQESVQNVTSAP...
  999- 1036 (55.48/23.12)	STILKTPQPFVAAQTP....................iTTAHSLLAAKESS...KSGYPLTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.08|      18|      19|     904|     922|       5
---------------------------------------------------------------------------
  904-  922 (25.68/19.42)	KQAQREAIASKAAKAkEAE
  926-  943 (30.40/18.29)	KQAEREAAEARAIQA.EAE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13889 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAKELAATQNGQPGSSDKMGAPSIKKQAVAGPT
2) AKALTKANQQQQTQRQAGAPIVPPAVAATPEAYVNTPSPADSGSAGSPFGKPLKQEDLKLPSHRKKPTKQESVQNVTSAPSTTAAANKVEKQAQREAIASKAAKAKEAELLKKQAEREAAEARAIQAEA
3) IGGQPINLKELTPQKLMQMYHAQKAHAAQQAQRFALQEESAKQQGRPTSQGQQQQQQAVGSQAGGPAYIAAQAQMRAKLQAGQHQQQQQQQAHHQQQQQQQQAQIQDHLRSMQAQQKALQQHSHQQALQQQQQQQQQQHMQQQQQQQQAQAQAQHQASLLQQQQHLQQQRQAPSTTTSSGGGQAITNDKTNPVNYPIPAAL
4) KIVQKQQQQAMAANGGQGLMGHSGQEGAHQMQQQANMHALMAQRAQQQQQQQQKQGGQQNAGLDARTLLMQQQATMLRNVAGGGGSHAGSPANQRANLSTLNQPMNGSQQTTPVMQQRQPLNHMQQQQQQQAQQQNQGQRQAAFTNGQQGSAVSTNGNPTNGMIPAFKQFGG
5) SIILHSMGLSKPNNGAQMQQQQQQQQQQQQVPTNVNQQQMQQQQQLQMQLQHQQQQQQLQNQNAQIAAPKAQRVPSRGQSSLEEGSAQQPYPMQGLAQHPQLNAHQLQQLQKQQQNKTLALQQQQQQLQQAVKRGKQDLQTPVMAAAQVSPQAVADRPSPSKRRRANSKAQPVATPVLQGAL
965
814
227
34
470
997
942
427
205
651










Molecular Recognition Features






MoRF SequenceStartStop




NANANA