<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13868

Description Uncharacterized protein
SequenceMRNNSMGHSNLNPNYHRHNSNSINGVGNNNINMNNGNNVMGMNIGNGYNVNGMVYPNFKSGNSSHSRTASTSSVSMAYTPGYSKSSNSNYYSQNNYSPRPIKRYRIQPNEEMLIHKSRPLGYFGYSLQHKDQPEDVINEKTINSGYFNVPIIDIKSETMSARNDMIDKLKNPKYLSLLGSFAEEIIVEKNRQSHNKSTVSIIKSDNNESEEFMNSRVNIGNTKQIIRNIISQNISLFDSMRIIADLKHAWKNKPFTEWSQVIMEELIKFPNITSLQQQIQNSNNSNNSDSSQKNNSINEQQMIKKWNFCVKLTRYLFIEGLIEPRILLKGLLNIFDSSNFQQCVLFLPILKEYLNDFSRSRALMTSLLDTCIKKLSSIKEEYLSKRICEYHYINLISLVKEILIATPDVMIKPNTWQSLEKVLNNKYINYYPNYMNPLIKAAYENLFQTYRQMITKRNSLFNNYSFDTTLMDKDETEDNDEQLNYFENCTNFSELCKLLNLKMYYSNKKESNGKIIFNEPLSLEEKIISLCNWGIKFPTHGIYMTSILIKKLVEDSDDPDEELEKIQNIFNKYLNEFNIDDRFEYKKLVELFGELIRNELFFSDQYIRKLIARGYFEKNKRSEKNTKRYLRYLHDFPIFDADKEQINQRRILLYGVYKNPKELKEIKIFNKLKEMIKLKLPHIFDFDFSDEKNIKSYYDKPEDYEKLATFDRDEKTFMLLRKISSFWKCKISEWLKDVVFNYVVPDIPIGSDNWWYINPGDSLLNVRQFATIVEILEVIGDKNGIVDLCLWLIPKIKKRTMNHYIITCINKNKLLINLTKRSKELFDIIWKKHNKLKSENNIDRVLLLFLISFNETFGFEIEKDIMEQIEKDLKIEHKEFNNYEDVITTFEKTINSIKDYNAISPSDLLLLQCKYQHNVTELKKYFKYILEVKLERDYSKMNKNQIIYNFDIFTEILRQFNDGFNDFNDVLFGYLSENYLKDSLIDISNNNQQINYQNNSNLKQINFKLQNYFFILLFTTGSCSISRLLSDYFKPTMELFKNHLINGKSINENSIVLFDNVITLMHILFTVDDSKPIIDDLYLTTKMIHYLRSKRINILRSGESYNNCLDLFQTIITIFSELINKSHTALAKQFIPKIKVFLNDWIKAPWFFKINLININYLHKKLFNFNSLYSEDTSKNIIYLLTLYVLNMIYHGEYFVTGKAVESPILNINTIENNKEFKMDNIAWEEWNKFFKSVYLLYKDWTPSVCKVALILINNLWLLNDKNRNRSDEFSSSLIKGFIHATLSTLTETNENRNKITIETNCISQKAILSYISLFKPKFNVEIARSIIKSFYLNYETPLDVCINKKSELNLDSITYFADFFSAIVYNINIIKNKFDPNNNNNSNHMLGINEDMKYNIIKNLLNHFQWYNDNKKILDIMEDSQVLYDEAKYIVDNDLIETTSIFNKNKMLQSLTPIEENRKHLTIEIFRSNIFFMLKVLHPLLASICRRPKEGNILSWIKVLIHLLSSQIIHGNGIQIKLFEYTLDIVTFLLDETPDEYKKEQFLLTQEIQREIDIPPILASRINQILPIRIQNIYEFNLSISGNNNSKLISSNIINPWEWFKEIRPSQGDSTNENKKDENKNNGLVLKSVPLDSVNFQKDKIYPLSYFDINKYKKLDKGLITTYENHFDDFNILNDLDLAKSLNESINLEKLVVRNGIIKEENKSVANSYSIIDEKIIKPLNMQYNNMVSSMPKNNQFINNINNPLKRKSFQ
Length1756
PositionKinase
OrganismNeocallimastix californiae
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Chytridiomycota> Chytridiomycota incertae sedis> Neocallimastigomycetes> Neocallimastigales> Neocallimastigaceae> Neocallimastix.
Aromaticity0.12
Grand average of hydropathy-0.437
Instability index41.54
Isoelectric point8.51
Molecular weight206920.81
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13868
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|    1478.71|     301|     564|     808|    1113|       1
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  127-  388 (176.81/86.94)	......................................................................................LQHK....DQPEDVIN..EKTINS......GYF.......NVPIIDI....KSET.MSARNDmI...DK....LKnpK.............................................YLsllgSFAEEIIVEKNR...........QSHNKstvsiiksdnneseefmnsrvnigntkqiirNII...................SQNISLF.DSMRIIADlkhawknkPFTEWS.QV.....imeeLIKFP........................................................NITSLQQQIQ.........NSNNSNnsdssqknnsineqqmIKKWN.FcvKLT.RYLFI.........................................................EG....LIEPRI.LLK..GLLNIFD..SSNF....QQCVLFLPI..LKEYLNDFSRSRALMTSL.LDT........CIKKLSSIK................EEYLSkriC....
  390-  808 (248.16/126.43)	..Y....HYINLISLVKEILiatpDVMIKP.NTWQS......LEKVLNNK...YINYYPNY..MNPLIKAAY..ENLF..QTYRqmITKRNslFNNY.....SFDTTLMD.....KDET.......EDNDEQL....NYFEnCT...N.F...SE....LC..KllnlkmyysnkkesngkiifneplsleekiislcnwgikfpthgiYM....TSILIKKLVEDS...........DDPDE...............................E...........................LEKIQNIFNK........YLNEFNiDDrfeykklveLFGELIRNelffsdqyirkliargyfeknkrsekntkrylrYLHDFP.............I.FDADKEQINqrrillygvYKNPKE................LKEIKiF.nKLK.EMIKLKLphiFDFDFsdekniksyydkpedyeklatfdrdektfmllrkissfwkCKISEWLKDvvfnYVVPDIPIGS..D...NWW..YINP...gDSLLNVRQFATIVEILEVIGDKNGIVD...LCL.......WLIPKIKKRT.......MNhyIITC..............
  811- 1112 (496.14/265.74)	KNK....LLINLTKRSKELF....DIIWKKhNKLKSEN...NIDRVLLLF...LISFNETF..GFEIEKDIM..EQIE..KDLK..IEHKE..FNNYEDVITTFEKTINSI....KDYN.......AISPSDL....LLLQ.CKYQHN.V...TE....LK..K.............................................YF....KYILEVKLERDY...........SKMNK...............................NQI...................IYNFDIFTEILRQFND........GFNDFN.DV.........LFGYLSEN.................................YLKDSL.............IDISNNNQQIN.........YQNNSN................LKQIN.F..KLQ.NYFFILL...FTTGS........................................CSISRLLSD....YFKPTMELFK..NHLINGK..SINE....NSIVLFDNVITLMHILFTVDDSKPIIDDLYLTT.......KMIHYLRSKR.......IN..ILRSGESYNN...CLDLF
 1152- 1476 (275.72/144.88)	FKI....NLININYLHKKLF....NF.....NSLYSEDtskNIIYLLTLYvlnMIYHGEYFvtGKAVESPILniNTIEnnKEFK..MDNIA..WEEW.......NKFFKSVyllyKDWTpsvckvaLILINNL....WLLN.DKNRNR.S...DEfsssLI..K.............................................GF....IHATLSTLTETN...........ENRNK...............................ITIetncisqkailsyislfkpKFNVEIARSIIKSFYL........NYETPL.DV.........CINKKSEL.................................NL.DSItyfadffsaivynINIIKNKFDPN.........NNNNSN...............hMLGIN.E..DMKyN...................................................................IIKNLLNHFQ..WYNDNKKilDIME....DSQVLYD.............EAKYIVDNDLIETtsifnknKMLQSLTPIEenrkhltIE..IFRS.....N......IF
 1480- 1744 (281.89/145.00)	..KvlhpLLASICRRPKEGN....ILSWIK................VLIH...LLSSQIIH..GNGIQ................................IKLFEYTLDIV....TFLL.......DETPDEYkkeqFLLT.QEIQRE.IdipPI....LA..S.............................................RI....NQILPIRIQNIYefnlsisgnnnSKLIS...............................SNI...................INPWEWFKEIRPSQGD........STNENK.................KDE.................................NKNNGL.............VLKSVPLDSVN.........FQ.....................KDKI.Y..PL..SYFDINK...YK............................................KLDKGLIT....TYENHFDDFNilNDLDLAK..SLNEsinlEKLVVRNGIIKEENK..SVANSYSIIDE............KIIKPLNMQY.......NN..MVSSMPKNNQ...FIN..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.79|      28|      41|       6|      33|       2
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    6-   33 (53.01/28.33)	MGHS.NLN....PNYHRHNSNSINGVGNNNINM
   44-   76 (38.77/18.73)	IGNGyNVNgmvyPNFKSGNSSHSRTASTSSVSM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13868 with Med12 domain of Kingdom Fungi
Unable to open file!