<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13854
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MPFMMEDSMGGTMQVDLHDVDDLFGDVTLPARAPSKRLLLRLDELRGRGSCQGLAWSKSGTIASISPDGQSLDLRYLRAHPKDATWSLSEPTSCTPWQGPLVGPLAHLSWAPTPNPQLAVIDSVGRVLILNFSPNLNRPSTARRWETDAVDDLNAIVGTYWLNTMPAHKGMANPLHAPAVKHGNGYTYEPSMLISNMPFHPNPSQSALLCVTASGMLKMFWTQNTNKIEETTLELDSVVSADDLVTHAALCSDSRSKSIIVALATASKQLQVVRVVLNWNNPPPQESMKGIPSASQPLSPTLNERLVAVSTWLPGGGSESHLDPCMTQLSHIELLPTMMDQVNRTWLAPVILTVRSFVPTPETPYNQEVQSIIDRWEIVIDQPQTVHSAFEQLGSRRNSVGSQPQAFTKLKKLDTIIMNKIIIGIEVVRMGTVVAFMFSDGAVEYRDRVTMNEVWNAVNLDRINSIYEAGFVQSGGETPCLQTALSPTNFSLVQLGEDGKIQWHGVNYTLGDVSALDDAQHSAVIAALTLSAAQAATSHSNIDDILAVGRRFTHSHRIFAVDWVTEMVKMMRIAVDYSEEAPHDNLVRNNMLQLCLSTLNHLGWRGEYQPRTFHSKLSMLALNLRNIVILITIASNGPGIAKDRSPLDEPEVVDALAGCCKWSMDLLCWLADSLFCLLDDNKFLELLNQQRFSEVTPYLVGRNDVALHMVLSSATRGLISAVCRRIIHLNNLSQRAIQYYESRGAGSTNEASSKGSGALMSLYHAYQKILGYTSTSLIKVQEFDRLLSTLGADIRKSYSSSFANLANAPQQHQNQNNNTPKPDPGEVRIKRAQTACELTLLLAGQPPYPTFLPVVNKFFKEDLAEFRKHTDRAALFFGDYELLEIDDESRALAQRRQKGVRVDMFKRVEIFGRKHSSVPEELPLRRCARCASVMEDIAMVSNKPGINFVLTQQRNCCCGGRLAVLTRGELVG |
Length | 972 |
Position | Tail |
Organism | Pseudomassariella vexata |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Xylariomycetidae> Xylariales> Pseudomassariaceae> Pseudomassariella.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.160 |
Instability index | 41.96 |
Isoelectric point | 6.35 |
Molecular weight | 107548.76 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP13854
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 91.09| 28| 32| 414| 441| 1
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414- 441 (47.31/32.50) DTIIMNKIIIGIEVVRMGTV..VAFMFSDG
447- 476 (43.78/29.55) DRVTMNEVWNAVNLDRINSIyeAGFVQSGG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 38.36| 10| 321| 631| 640| 2
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631- 640 (19.16/13.23) ITIASNGPGI
937- 946 (19.20/13.26) IAMVSNKPGI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 90.46| 26| 29| 42| 69| 3
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42- 69 (40.24/29.28) LDELRGRGscQGLAWSKSGTIASISPDG
74- 99 (50.22/29.55) LRYLRAHP..KDATWSLSEPTSCTPWQG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 178.93| 45| 228| 100| 146| 4
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100- 146 (80.56/58.86) PLVGPLAHLSW.APTPNPQ.....LA.VIDSVGRVLilNFSPNLN.RP......STARRWE
277- 312 (40.06/22.21) ........LNWnNPPPQES.....MK.GIPSASQPL....SPTLNeRL......VAVSTW.
324- 377 (58.31/36.02) PCMTQLSHIEL.LPTMMDQvnrtwLApVILTVR.....SFVPTPE.TPynqevqSIIDRWE
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