<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13818
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MDERCQPDFLRRVQLGEVVVLHDYQVDQRMTVADIGCAEIVNAAYRRGVPAKKFVKLLSKLENESNPVDVADQLASSLLDQLLQPPGTPAIVLSYLSQSLSDSTGPAILPAQTFLVHLLFRLALPPPPSTSALAAIASLLLACPSSLFSPLSGELHCPASLVPDVGSSTSTSPTPTLGLVLPLLRLCSTSAPAPIVSLTARILGLVQPYPAPPLDVGLEAGGLLQTLPEMVSTPLRDSLGGLMADLAISQDTTGMGLSLDGMTGMENVIPNQGDITMHGGDENAQTVTLPPLGTDISSLPLPQSLAFLLNYLRRSSRWTDNADSSGDQVLLRLAPHLAPDPTTFLAQLLEASIVAFSGQADGDSPGGIEKWLFISEGLPSLLQSWKGHGDLGYPYPDTLATSLKSVFERQSGRLAENNTWMAQRYDALVSAVDSEDETGGYVAPDGWSLCSLEVTLLLRLIELDLLSRQDARSVLPGVTIPSSSSGESLSNRVAVASPSHLPPLAHLIIYSPGAARSFASEVSETIQSLTTNPPPDNLFSNLSASPSLIACLAAASPPAVLLGLLEKNLLDRPDDVNLRADDPQGTMTRFGEGVMLVEAAVHTFDLPLPRLLVEGRRALSLGDWEQTQRGLLNGWIKALFGSDGIDDQILSATSLQDFYRLAPSLIQQAIAARAAGQIDIDTLYSGLSYFSQDLLSWSLGGIVAWLCEETVRNGPVSGLHLQVLQRLVLGDAFPEALLRVAGGAIAGLLAPSSGLHEVFAASGIDVAAVRLKLEAIGVDVNQAPPLSFAQRIANLRVTLQTVRQPELSQSSWTDALLPAFNSCLVSIGDLEALQLVLSEILFPSSINNESGDPLGRLFAILTVLGLGRAHSPLLSVLLDVTIPNVFEYNSPLAIAQPQSQPYAALGLAKLIKHSLLMATSLQIDTGGLVHAFADDLEYQSSRPVRDMLDRQRGKKAKRARRGVAREIGQAQKAVLEMVVHALGADEELRGTWPVFERFT |
Length | 999 |
Position | Tail |
Organism | Naematelia encephala |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Tremellomycetes>
Tremellales> Naemateliaceae> Naematelia.
|
Aromaticity | 0.05 |
Grand average of hydropathy | 0.146 |
Instability index | 49.91 |
Isoelectric point | 4.79 |
Molecular weight | 106441.45 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP13818
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 471.47| 100| 106| 162| 266| 1
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85- 161 (67.99/18.71) ...........PPG.TPAIVLSYLsqSLS...........DSTGPAilPAQTFLVHLL.FRLALPPPPSTSALAAiASLLLA...CPSSLFSPLSGELhcpASL...................
162- 261 (159.37/56.97) VPDVGSSTSTSPTP.TLGLVLPLL..RLC...........STSAPA..PIVSLTARILGLVQPYPAPPLDVGLEA.GGLLQT...LPEMVSTPLRDSL...GGLMADLAISQDTTGMGLSLDG
289- 387 (152.17/48.37) LPPLGTDISSLPLPqSLAFLLNYL..RRS...........SRWTDN..ADSSGDQVLLRLA.PHLAPDPTTFL.A.QLLEAS...IVAFSGQADGDSP...GGIEKWLFISEGLPSLLQSWKG
773- 863 (91.94/27.57) LEAIGVDVNQAPPL.SFAQRIANL..RVTlqtvrqpelsqSSWTDA..LLPAFNSCLVSIG........D..LEA.LQLVLSeilFPSSINNESGDPL...GRLFAILTV.............
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 422.29| 109| 116| 536| 646| 2
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435- 533 (113.92/66.85) EDETGGYVAPDGWS.LC...SLEVTLLLRLIELDLLSRQDA...RSVLPGVTIPSSSSGESLsnrVAVASPSHLPPLAHLIIysPGaARSFASEV.SETIQSLTTNP......................
536- 646 (178.41/115.24) DNLFSNLSASPSLI.ACLAAASPPAVLLGLLEKNLLDRPDDvnLRADDPQGTMTRFGEGVML...VEAAVHTFDLPLPRLLV..EG.RRALSLGD.WEQTQRGLLNGWIKAL..........FGSDGID
657- 765 (129.96/77.52) D..FYRL..APSLIqQAIAARAAGQIDIDTLYSGLSYFSQD..LLSWSLGGIVAW......L...CEETVR..NGPVSGLHL..QV.LQRLVLGDaFPEALLRVAGGAIAGLlapssglhevFAASGID
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