<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13814

Description Uncharacterized protein
SequenceMSSNFWTSSHATHWLLPRPAIIHARDIDSKYATPYQLYCLCIWLGGLIQKLGRRLGLRQTVIATATVFFRRFYLKNSYCETNPYLVMTACCFVAAKVEETPIHIKNVVTEAKGCFQENNIKLFPAEMSKLGEMEFYLLEDLDFHLVVFHPYRALMNICGREPADTGRFPVSRADEDAEMRRLSGGAEGEAESEPARIRRLMGRGTGEGLMEIEERVVQISTCIINDLYRTEIPLLYPPYVIALSALYLGFCVHAMQVAATNPNSNSSANTNTASTYDSPSTNTTTNHHNNIHTNNHNSNNNNSANNHHNSNNYHYNNTRTRASTANNPPSAKLLSRQQTIAADERLGLPPPPKGVAEFIASFQVSLPVLLACVQEIMVLYPIWESFEPSSASSLSSNTSTSTTSSLGFGVDINMSMGWRGSRNGVGAGNGTGSGGVGIGGGKKDKFGPEEAEALIRKMIEERMVDLNHPDNAGKEEIVIGKKRPRGG
Length487
PositionKinase
OrganismNaematelia encephala
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Tremellomycetes> Tremellales> Naemateliaceae> Naematelia.
Aromaticity0.08
Grand average of hydropathy-0.350
Instability index46.66
Isoelectric point6.95
Molecular weight53639.00
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13814
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.86|      19|      19|     277|     295|       1
---------------------------------------------------------------------------
  277-  295 (37.28/17.47)	DSPSTNTTTNHH..NNIHTNN
  297-  317 (31.58/13.89)	NSNNNNSANNHHnsNNYHYNN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.14|      15|      16|     175|     189|       2
---------------------------------------------------------------------------
  175-  189 (27.46/17.56)	EDAEMRRLSGGAEGE
  193-  207 (28.68/18.64)	EPARIRRLMGRGTGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     129.09|      31|      65|      72|     102|       3
---------------------------------------------------------------------------
   72-  102 (56.32/34.53)	FYLKNS....YCETNPY.LVMTACCFVAAKVEETPI
  104-  125 (29.26/14.87)	..IKNV....VTEAKG........CFQENNIKLFPA
  135-  170 (43.52/25.24)	FYLLEDldfhLVVFHPYrALMNICGREPADTGRFPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.39|      21|     118|     328|     359|       4
---------------------------------------------------------------------------
  328-  348 (35.03/34.53)	PPSAKLLSRQQTIAADERLGL
  388-  408 (34.36/11.95)	PSSASSLSSNTSTSTTSSLGF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13814 with CycC domain of Kingdom Fungi
Unable to open file!